Mercurial > repos > iuc > mothur_collect_single

diff collect.single.xml @ 5:7c07d1383ce7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 14:17:20 -0400
parents 3847fac4ecd1
children 2249a1ea2252
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--- a/collect.single.xml	Wed Feb 14 11:14:02 2018 -0500
+++ b/collect.single.xml	Tue Mar 20 14:17:20 2018 -0400
@@ -69,6 +69,7 @@
         <param name="abund" type="integer" value="10" min="0" label="abund - ACE Estimator threshold for abundant versus rare OTUs (default 10)"/>
         <param name="freq" type="float" value="100" min="0" label="freq - frequency for output (default is every 100 sequences)"
             help="Use a decimal between 0 and 1 to set the frequency as a percentage of the number of sequences"/>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -82,6 +83,7 @@
             <output_collection name="calcfiles" count="7">
                 <element name="shannon" md5="0a9c8a52f89898c3b7b7b2dfa24a4521" ftype="tabular"/>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test with label select and all calculators -->
@@ -91,6 +93,7 @@
             <output_collection name="calcfiles" count="25">
                 <element name="bstick" md5="a38d430c52768efca597e5b41fc1d84b" ftype="tabular"/>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>