Mercurial > repos > iuc > mothur_cluster_classic

comparison cluster.classic.xml @ 5:a9f5cdc57b39 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 14:02:21 -0400
parents 6af6b54bed72
children 5277694ef118
comparison
equal deleted inserted replaced
4:f72825e1f2b5 5:a9f5cdc57b39
54 <option value="10000">.0001</option> 54 <option value="10000">.0001</option>
55 <option value="100000">.00001</option> 55 <option value="100000">.00001</option>
56 <option value="1000000">.000001</option> 56 <option value="1000000">.000001</option>
57 </param> 57 </param>
58 <param argument="sim" type="boolean" checked="false" truevalue="true" falsevalue="false" label="sim - Matrix values are Similary instead of Distance"/> 58 <param argument="sim" type="boolean" checked="false" truevalue="true" falsevalue="false" label="sim - Matrix values are Similary instead of Distance"/>
59 <expand macro="param-savelog"/>
59 </inputs> 60 </inputs>
60 <outputs> 61 <outputs>
61 <expand macro="logfile-output"/> 62 <expand macro="logfile-output"/>
62 <data name="rabund" format="mothur.rabund" from_work_dir="dist*.rabund" label="${tool.name} on ${on_string}: rabund (Rank Abundance)"/> 63 <data name="rabund" format="mothur.rabund" from_work_dir="dist*.rabund" label="${tool.name} on ${on_string}: rabund (Rank Abundance)"/>
63 <data name="sabund" format="mothur.sabund" from_work_dir="dist*.sabund" label="${tool.name} on ${on_string}: sabund (Species Abundance)"/> 64 <data name="sabund" format="mothur.sabund" from_work_dir="dist*.sabund" label="${tool.name} on ${on_string}: sabund (Species Abundance)"/>
73 <has_text text="group"/> 74 <has_text text="group"/>
74 <has_text text="unique"/> 75 <has_text text="unique"/>
75 <has_line_matching expression="^label\tnumOtus\tOtu01\tOtu02\tOtu03\tOtu04\tOtu05\tOtu06\tOtu07\tOtu08\tOtu09\tOtu10\tOtu11\tOtu12\tOtu13\tOtu14\tOtu15\tOtu16\tOtu17\tOtu18\tOtu19\tOtu20\tOtu21\tOtu22\tOtu23\tOtu24$"/> 76 <has_line_matching expression="^label\tnumOtus\tOtu01\tOtu02\tOtu03\tOtu04\tOtu05\tOtu06\tOtu07\tOtu08\tOtu09\tOtu10\tOtu11\tOtu12\tOtu13\tOtu14\tOtu15\tOtu16\tOtu17\tOtu18\tOtu19\tOtu20\tOtu21\tOtu22\tOtu23\tOtu24$"/>
76 </assert_contents> 77 </assert_contents>
77 </output> 78 </output>
79 <param name="savelog" value="true"/>
78 <expand macro="logfile-test"/> 80 <expand macro="logfile-test"/>
79 </test> 81 </test>
80 </tests> 82 </tests>
81 <help><![CDATA[ 83 <help><![CDATA[
82 84