Mercurial > repos > iuc > mothur_cluster

comparison cluster.xml @ 5:7fbfa011df79 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:50:20 -0400
parents d7782c32375c
children 64384145e15a
comparison
equal deleted inserted replaced
4:de4c35b5a5be 5:7fbfa011df79
92 <option value="10000">.0001</option> 92 <option value="10000">.0001</option>
93 <option value="100000">.00001</option> 93 <option value="100000">.00001</option>
94 <option value="1000000">.000001</option> 94 <option value="1000000">.000001</option>
95 </param> 95 </param>
96 <param argument="sim" type="boolean" checked="false" truevalue="true" falsevalue="false" label="sim - Matrix values are Similary instead of Distance"/> 96 <param argument="sim" type="boolean" checked="false" truevalue="true" falsevalue="false" label="sim - Matrix values are Similary instead of Distance"/>
97 <expand macro="param-savelog"/>
97 </inputs> 98 </inputs>
98 <outputs> 99 <outputs>
99 <expand macro="logfile-output"/> 100 <expand macro="logfile-output"/>
100 <data name="rabund" format="mothur.rabund" from_work_dir="matrix.dist*.rabund" label="${tool.name} on ${on_string}: rabund (Rank Abundance)"/> 101 <data name="rabund" format="mothur.rabund" from_work_dir="matrix.dist*.rabund" label="${tool.name} on ${on_string}: rabund (Rank Abundance)"/>
101 <data name="sabund" format="mothur.sabund" from_work_dir="matrix.dist*.sabund" label="${tool.name} on ${on_string}: sabund (Species Abundance)"/> 102 <data name="sabund" format="mothur.sabund" from_work_dir="matrix.dist*.sabund" label="${tool.name} on ${on_string}: sabund (Species Abundance)"/>
120 <expand macro="test-list-format"/> 121 <expand macro="test-list-format"/>
121 <has_text text="0.03"/> 122 <has_text text="0.03"/>
122 <has_text text="U68688"/> 123 <has_text text="U68688"/>
123 </assert_contents> 124 </assert_contents>
124 </output> 125 </output>
126 <param name="savelog" value="true"/>
125 <expand macro="logfile-test"/> 127 <expand macro="logfile-test"/>
126 </test> 128 </test>
127 <test><!-- test with column input --> 129 <test><!-- test with column input -->
128 <param name="format" value="column"/> 130 <param name="format" value="column"/>
129 <param name="dist" value="amazon.pair.dist"/> 131 <param name="dist" value="amazon.pair.dist"/>
143 <expand macro="test-list-format"/> 145 <expand macro="test-list-format"/>
144 <has_text text="0.03"/> 146 <has_text text="0.03"/>
145 <has_text text="U68688"/> 147 <has_text text="U68688"/>
146 </assert_contents> 148 </assert_contents>
147 </output> 149 </output>
150 <param name="savelog" value="true"/>
148 <expand macro="logfile-test"/> 151 <expand macro="logfile-test"/>
149 </test> 152 </test>
150 <test><!-- test with column input --> 153 <test><!-- test with column input -->
151 <param name="format" value="column"/> 154 <param name="format" value="column"/>
152 <param name="dist" value="amazon.pair.dist"/> 155 <param name="dist" value="amazon.pair.dist"/>
166 <expand macro="test-list-format"/> 169 <expand macro="test-list-format"/>
167 <has_text text="0.03"/> 170 <has_text text="0.03"/>
168 <has_text text="U68688"/> 171 <has_text text="U68688"/>
169 </assert_contents> 172 </assert_contents>
170 </output> 173 </output>
174 <param name="savelog" value="true"/>
171 <expand macro="logfile-test"/> 175 <expand macro="logfile-test"/>
172 </test> 176 </test>
173 </tests> 177 </tests>
174 <help><![CDATA[ 178 <help><![CDATA[
175 179