Mercurial > repos > iuc > mothur_clearcut

diff clearcut.xml @ 11:9d86940f48b8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ff56a4c9218ddea84ff5cd72fd98c62db212465d"
author iuc
date Thu, 05 Nov 2020 20:27:37 +0000
parents 101bd1293c5f
children
line wrap: on
line diff
--- a/clearcut.xml	Sun Dec 01 00:33:03 2019 +0000
+++ b/clearcut.xml	Thu Nov 05 20:27:37 2020 +0000
@@ -118,13 +118,12 @@
 
 The clearcut_ command runs clearcut
 
-The clearcut command allows mothur users to run the clearcut_program_ from within mothur. The clearcut program written by Initiative for Bioinformatics and Evolutionary Studies (IBEST) at the University of Idaho. For more information about clearcut please refer to http://bioinformatics.hungry.com/clearcut/
+The clearcut command allows mothur users to run the clearcut program from within mothur. The clearcut program written by Initiative for Bioinformatics and Evolutionary Studies (IBEST) at the University of Idaho. 
 
 Clearcut is a stand-alone reference implementation of relaxed neighbor joining (RNJ).
 
 Clearcut is capable of taking either a distance matrix or a multiple sequence alignment (MSA) as input.  If necessary, Clearcut will compute corrected distances based on a configurable distance correction model (Jukes-Cantor or Kimura).  Clearcut outputs a phylogenetic tree in Newick format and an optional corrected distance matrix.
 
-.. _clearcut_program: http://bioinformatics.hungry.com/clearcut/
 .. _clearcut: https://www.mothur.org/wiki/Clearcut
 
 v.1.20.0: Trivial upgrade to Mothur 1.33