Mercurial > repos > iuc > mothur_classify_tree

comparison classify.tree.xml @ 6:f350dab14d28 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:55:11 -0400
parents b48b0dd9b75e
children
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5:9ed7f2e535bb 6:f350dab14d28
34 <param argument="tree" type="data" format="txt" label="tree - Sequences to filter"/> 34 <param argument="tree" type="data" format="txt" label="tree - Sequences to filter"/>
35 <param argument="name" type="data" format="mothur.names" optional="true" label="name - Sequences Name reference file"/> 35 <param argument="name" type="data" format="mothur.names" optional="true" label="name - Sequences Name reference file"/>
36 <param argument="group" type="data" format="mothur.groups" optional="true" label="group - Sequences Group reference"/> 36 <param argument="group" type="data" format="mothur.groups" optional="true" label="group - Sequences Group reference"/>
37 <param argument="cutoff" type="integer" value="51" min="51" max="100" optional="true" label="cutoff - consensus confidence threshold" 37 <param argument="cutoff" type="integer" value="51" min="51" max="100" optional="true" label="cutoff - consensus confidence threshold"
38 help="The default is 51, meaning 51%. Cutoff cannot be below 51"/> 38 help="The default is 51, meaning 51%. Cutoff cannot be below 51"/>
39 <expand macro="param-savelog"/>
39 </inputs> 40 </inputs>
40 <outputs> 41 <outputs>
41 <expand macro="logfile-output"/> 42 <expand macro="logfile-output"/>
42 <data name="out_tree" format="txt" from_work_dir="tree.*taxonomy.tre" label="${tool.name} on ${on_string}: taxonomy.tre"/> 43 <data name="out_tree" format="txt" from_work_dir="tree.*taxonomy.tre" label="${tool.name} on ${on_string}: taxonomy.tre"/>
43 <data name="summary" format="tabular" from_work_dir="tree.*taxonomy.summary" label="${tool.name} on ${on_string}: taxonomy.summary"/> 44 <data name="summary" format="tabular" from_work_dir="tree.*taxonomy.summary" label="${tool.name} on ${on_string}: taxonomy.summary"/>
46 <test> 47 <test>
47 <param name="taxonomy" value="abrecovery.pds.wang.taxonomy" ftype="mothur.ref.taxonomy"/> 48 <param name="taxonomy" value="abrecovery.pds.wang.taxonomy" ftype="mothur.ref.taxonomy"/>
48 <param name="tree" value="treetest.tre" ftype="txt"/> 49 <param name="tree" value="treetest.tre" ftype="txt"/>
49 <output name="out_tree" md5="cd2d3275d225ee8ba5df004a9885f50c" ftype="txt"/> 50 <output name="out_tree" md5="cd2d3275d225ee8ba5df004a9885f50c" ftype="txt"/>
50 <output name="summary" md5="78dfe4198793f7ee5632c5b88b6bc295" ftype="tabular"/> 51 <output name="summary" md5="78dfe4198793f7ee5632c5b88b6bc295" ftype="tabular"/>
52 <param name="savelog" value="true"/>
51 <expand macro="logfile-test"/> 53 <expand macro="logfile-test"/>
52 </test> 54 </test>
53 </tests> 55 </tests>
54 <help><![CDATA[ 56 <help><![CDATA[
55 57