Mercurial > repos > iuc > mothur_chimera_check

diff chimera.check.xml @ 4:083706146c28 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 14:09:32 -0400
parents 099250d2535e
children
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--- a/chimera.check.xml	Wed Feb 14 09:55:35 2018 -0500
+++ b/chimera.check.xml	Tue Mar 20 14:09:32 2018 -0400
@@ -61,6 +61,7 @@
                 <param argument="name" type="data" format="mothur.names" optional="true" label="name - Names of queries for which to generate SVG plot"/>
             </when>
         </conditional>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -76,6 +77,7 @@
             <param name="source" value="hist"/>
             <param name="reference" value="HMP_MOCK.v35.align"/>
             <output name="chimeracheck.chimeras" file="Mock_S280_L001_R1_001_small.trim.contigs.good.chimeracheck.chimeras" ftype="txt"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test>
@@ -89,6 +91,7 @@
                 <element name="M00967_43_000000000-A3JHG_1_1101_14010_4122" file="M00967_43_000000000-A3JHG_1_1101_14010_4122.chimeracheck.svg"/>
                 <element name="M00967_43_000000000-A3JHG_1_1101_13293_4703" md5="0d99dc17c183dab4efc75c697060a9a5"/>
             </output_collection>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>