Mercurial > repos > iuc > mothur_chimera_ccode

diff chimera.ccode.xml @ 5:8fd55f09d7e8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:47:34 -0400
parents d3f6d99d7ad7
children fd378a7b7c99
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line diff
--- a/chimera.ccode.xml	Wed Feb 14 11:28:57 2018 -0500
+++ b/chimera.ccode.xml	Tue Mar 20 13:47:34 2018 -0400
@@ -70,6 +70,7 @@
             help="Recommended window size is between 5 and 20% of your trimmed sequence length. Default is 10% of the sequence length. Default is used if < 1"/>
         <param name="numwanted" type="integer" value="20" label="numwanted - Number of sequences compared with each query"
             help="uses default if set to 0"/>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -89,6 +90,7 @@
             </output>
             <output name="ccode.accnos" file="Mock_S280_L001_R1_001_small.trim.contigs.good.ccode.accnos" ftype="mothur.accnos"/>
             <output name="mapinfo" md5="ef3353b1467fe95a24153513917e6444" ftype="tabular"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test> <!-- test with default ecoli mask -->
@@ -104,6 +106,7 @@
             </output>
             <output name="ccode.accnos" md5="47ddf86ec36aafd495aa902b3e06ffca" ftype="mothur.accnos"/>
             <output name="mapinfo" md5="25221b1e109d9c0a939efb319e7a9896" ftype="tabular"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>