Mercurial > repos > iuc > mothur_bin_seqs

comparison bin.seqs.xml @ 6:d7c272efbc4a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:48:56 -0400
parents f5cdc7035fd8
children
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equal deleted inserted replaced
5:36b494091e41 6:d7c272efbc4a
44 <expand macro="labeloptions"/> 44 <expand macro="labeloptions"/>
45 </param> 45 </param>
46 <param argument="group" type="data" format="mothur.groups" optional="true" label="group - Sequences Name reference"/> 46 <param argument="group" type="data" format="mothur.groups" optional="true" label="group - Sequences Name reference"/>
47 <param argument="count" type="data" format="mothur.count_table" optional="true" label="count - Count Table" 47 <param argument="count" type="data" format="mothur.count_table" optional="true" label="count - Count Table"
48 help="Represents the number of duplicate sequences for a given representitive sequence"/> 48 help="Represents the number of duplicate sequences for a given representitive sequence"/>
49 <expand macro="param-savelog"/>
49 </inputs> 50 </inputs>
50 <outputs> 51 <outputs>
51 <expand macro="logfile-output"/> 52 <expand macro="logfile-output"/>
52 <collection name="fastafiles" type="list" label="${tool.name} on ${on_string}: fastafiles per label"> 53 <collection name="fastafiles" type="list" label="${tool.name} on ${on_string}: fastafiles per label">
53 <discover_datasets pattern=".*?\.(?P&lt;designation&gt;.*)\.fasta" format="fasta"/> 54 <discover_datasets pattern=".*?\.(?P&lt;designation&gt;.*)\.fasta" format="fasta"/>
63 <expand macro="test-fasta-format"/> 64 <expand macro="test-fasta-format"/>
64 <has_text text="U68589"/> 65 <has_text text="U68589"/>
65 </assert_contents> 66 </assert_contents>
66 </element> 67 </element>
67 </output_collection> 68 </output_collection>
69 <param name="savelog" value="true"/>
68 <expand macro="logfile-test"/> 70 <expand macro="logfile-test"/>
69 </test> 71 </test>
70 <test><!-- test with group and name file and label select --> 72 <test><!-- test with group and name file and label select -->
71 <param name="otu" value="amazon.an.list"/> 73 <param name="otu" value="amazon.an.list"/>
72 <param name="fasta" value="amazon.fasta"/> 74 <param name="fasta" value="amazon.fasta"/>
79 <expand macro="test-fasta-format"/> 81 <expand macro="test-fasta-format"/>
80 <has_text text="U68589"/> 82 <has_text text="U68589"/>
81 </assert_contents> 83 </assert_contents>
82 </element> 84 </element>
83 </output_collection> 85 </output_collection>
86 <param name="savelog" value="true"/>
84 <expand macro="logfile-test"/> 87 <expand macro="logfile-test"/>
85 </test> 88 </test>
86 </tests> 89 </tests>
87 <help><![CDATA[ 90 <help><![CDATA[
88 91