diff align.seqs.xml @ 4:3a0b15089ff6 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:39:00 -0400
parents 4d29fc73525d
children e84817af097b
line wrap: on
line diff
--- a/align.seqs.xml	Wed Feb 14 09:59:38 2018 -0500
+++ b/align.seqs.xml	Tue Mar 20 13:39:00 2018 -0400
@@ -99,6 +99,7 @@
             </when>
             <when value="no"/>
         </conditional>
+        <expand macro="param-savelog"/>
     </inputs>
     <outputs>
         <expand macro="logfile-output"/>
@@ -119,6 +120,7 @@
                 </assert_contents>
             </output>
             <output name="report" file="Mock_S280_L001_R1_001_small.trim.contigs.good.align.report" ftype="mothur.align.report"/>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test>
@@ -143,6 +145,7 @@
                     <has_text text="M00967_43_000000000-A3JHG_1_1101_19936_3208"/>
                 </assert_contents>
             </output>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test>
@@ -168,6 +171,7 @@
                     <has_text text="M00967_43_000000000-A3JHG_1_1101_19936_3208"/>
                 </assert_contents>
             </output>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test blast -->
@@ -190,6 +194,7 @@
                     <has_text text="M00967_43_000000000-A3JHG_1_1101_19936_3208"/>
                 </assert_contents>
             </output>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
         <test><!-- test accno file recovery with flip set to true -->
@@ -216,6 +221,7 @@
                     <has_text text="reverse complement"/>
                 </assert_contents>
             </output>
+            <param name="savelog" value="true"/>
             <expand macro="logfile-test"/>
         </test>
     </tests>