Mercurial > repos > iuc > mothur_align_check

comparison align.check.xml @ 5:4e7411b1aa3d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
author iuc
date Tue, 20 Mar 2018 13:59:06 -0400
parents 2fc7aad419ff
children
comparison
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4:08d135c60067 5:4e7411b1aa3d
48 </conditional> 48 </conditional>
49 <param argument="count" type="data" format="mothur.count_table" optional="true" label="count_table file" 49 <param argument="count" type="data" format="mothur.count_table" optional="true" label="count_table file"
50 help="You can also provide a name file associated with your fasta file"/> 50 help="You can also provide a name file associated with your fasta file"/>
51 <param argument="name" type="data" format="mothur.names" optional="true" label="names file" 51 <param argument="name" type="data" format="mothur.names" optional="true" label="names file"
52 help="The count file is similar to the name file in that it is used to represent the number of duplicate sequences for a given representative sequence"/> 52 help="The count file is similar to the name file in that it is used to represent the number of duplicate sequences for a given representative sequence"/>
53 <expand macro="param-savelog"/>
53 </inputs> 54 </inputs>
54 <outputs> 55 <outputs>
55 <expand macro="logfile-output"/> 56 <expand macro="logfile-output"/>
56 <data name="align.check" format="mothur.align.check" from_work_dir="fasta.align.check" label="${tool.name} on ${on_string}: align.check"/> 57 <data name="align.check" format="mothur.align.check" from_work_dir="fasta.align.check" label="${tool.name} on ${on_string}: align.check"/>
57 </outputs> 58 </outputs>
64 <assert_contents> 65 <assert_contents>
65 <expand macro="test-aligncheck-format"/> 66 <expand macro="test-aligncheck-format"/>
66 <has_text text="U68589"/> 67 <has_text text="U68589"/>
67 </assert_contents> 68 </assert_contents>
68 </output> 69 </output>
70 <param name="savelog" value="true"/>
69 <expand macro="logfile-test"/> 71 <expand macro="logfile-test"/>
70 </test> 72 </test>
71 <test><!-- test with names file --> 73 <test><!-- test with names file -->
72 <param name="fasta" value="amazon.align_head_short"/> 74 <param name="fasta" value="amazon.align_head_short"/>
73 <param name="source" value="history"/> 75 <param name="source" value="history"/>
77 <assert_contents> 79 <assert_contents>
78 <expand macro="test-aligncheck-format"/> 80 <expand macro="test-aligncheck-format"/>
79 <has_text text="U68589"/> 81 <has_text text="U68589"/>
80 </assert_contents> 82 </assert_contents>
81 </output> 83 </output>
84 <param name="savelog" value="true"/>
82 <expand macro="logfile-test"/> 85 <expand macro="logfile-test"/>
83 </test> 86 </test>
84 </tests> 87 </tests>
85 <help><![CDATA[ 88 <help><![CDATA[
86 89