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comparison modify_loom.xml @ 6:f644ac3f617d draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/anndata/ commit 58ea92c594280588f6045093d77af6d7d885185d"
author iuc
date Sat, 07 May 2022 19:49:52 +0000
parents 540a34575492
children 7f63d3324a50
comparison
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5:7c237a0c48f3 6:f644ac3f617d
1 <tool id="modify_loom" name="Manipulate loom object" version="@VERSION@+@GALAXY_VERSION@"> 1 <tool id="modify_loom" name="Manipulate loom object" version="@VERSION@+galaxy1">
2 <description>Add layers, or row/column attributes to a loom file</description> 2 <description>Add layers, or row/column attributes to a loom file</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <expand macro="version_command"/> 7 <expand macro="version_command"/>
8 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
9 python '$__tool_directory__/modify_loom.py' -f '${input}' 9 cp '${input}' loom_add_out.loom &&
10 python '$__tool_directory__/modify_loom.py' -f 'loom_add_out.loom'
10 #if $which_add.add_type == "cols": 11 #if $which_add.add_type == "cols":
11 -a cols -c '${which_add.cols}' 12 -a cols -c '${which_add.cols}'
12 #else if $which_add.add_type == "cols": 13 #else if $which_add.add_type == "cols":
13 -a rows -r '${which_add.rows}' 14 -a rows -r '${which_add.rows}'
14 #else if $which_add.add_type == "layers": 15 #else if $which_add.add_type == "layers":
15 -a layers -l '${which_add.layers}' 16 -a layers -l '${which_add.layers}'
16 #end if 17 #end if
17 && cp '${input}' loom_add_out.loom
18 ]]></command> 18 ]]></command>
19 <inputs> 19 <inputs>
20 <param name="input" type="data" format="loom" label="Loom file"/> 20 <param name="input" type="data" format="loom" label="Loom file"/>
21 <conditional name="which_add"> 21 <conditional name="which_add">
22 <param name="add_type" type="select" label="Select data attribute to add to loom"> 22 <param name="add_type" type="select" label="Select data attribute to add to loom">