Mercurial > repos > iuc > mmseqs2_taxonomy_assignment

annotate tool-data/mmseqs2_databases.loc.sample @ 1:96b969571420 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 611b90f1628037f05d85905c88629a422d0a2053
author iuc
date Mon, 14 Apr 2025 18:39:04 +0000
parents dbd5e2791f49
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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dbd5e2791f49 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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1 #This is a sample file distributed with Galaxy that enables tools
dbd5e2791f49 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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2 #to use a directory of metagenomics files.
dbd5e2791f49 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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3 #file has this format (white space characters are TAB characters)
dbd5e2791f49 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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4 # Tab separated with 6 columns:
dbd5e2791f49 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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5 # value : unique value used to generate the database path
dbd5e2791f49 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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6 # name: name of the database generate using the date and version of the mmseqs2 databases
dbd5e2791f49 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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7 # type : type of the database (aminoacid, nucleotide...)
dbd5e2791f49 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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8 # taxonomy : whether or not the database should contain taxonomy information
dbd5e2791f49 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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9 # path : final path to mmseqs2 databases on galaxy
dbd5e2791f49 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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10 # version : tool version to filter database version depending of the tool
dbd5e2791f49 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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11 # value, name, type, taxonomy, path, version
dbd5e2791f49 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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12 # eg.
dbd5e2791f49 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mmsesq2 commit 25b603890e8048ac7bbffb81eaaa440f87049521
iuc
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13 #SILVA-15.6f452-10022025 SILVA 10022025 nucleotide yes ${__HERE__}/mmseqs2/SILVA 15.6f452