Mercurial > repos > iuc > mlst

comparison mlst_list.xml @ 3:022dc4bbc27e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mlst commit 829727d4bc801d4422680e018c2873bbab2e6a67
author iuc
date Mon, 15 Oct 2018 07:41:28 -0400
parents 11e1af1f7f35
children 7eb5e58d2263
comparison
equal deleted inserted replaced
2:11e1af1f7f35 3:022dc4bbc27e
1 <tool id="mlst_list" name="MLST List" version="2.10"> 1 <tool id="mlst_list" name="MLST List" version="@VERSION@">
2 <requirements> 2 <description>Lists available schemes for the MLST tool.</description>
3 <requirement type="package" version="2.10">mlst</requirement> 3 <macros>
4 </requirements> 4 <import>macros.xml</import>
5 5 </macros>
6 <version_command>mlst --version</version_command> 6 <expand macro="requirements" />
7 <expand macro="version_command" />
7 8
8 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
9 mlst $list_type > "$report" 10 mlst $list_type > "$report"
10 ]]></command> 11 ]]></command>
11 12
45 46
46 MLST List will list all the scheme names used by MLST. Selecting the long list option will also provide the alleles for all MLST schemes. 47 MLST List will list all the scheme names used by MLST. Selecting the long list option will also provide the alleles for all MLST schemes.
47 48
48 ]]></help> 49 ]]></help>
49 50
50 <citations> 51 <expand macro="citations" />
51 <citation type="bibtex">
52 @UNPUBLISHED{Seemann2016,
53 author = "Seemann T",
54 title = "ABRicate: mass screening of contigs for antiobiotic resistance genes",
55 year = "2016",
56 note = "https://github.com/tseemann/abricate"}
57 </citation>
58 </citations>
59 </tool> 52 </tool>