Mercurial > repos > iuc > miniprot_index

changeset 4:1995f709c24d draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/miniprot commit c5721c97d7ec8c3a53725dbb685bbcdc677a75a9
author iuc
date Fri, 25 Apr 2025 13:04:50 +0000
parents 61985c62f52b
children
files macros.xml miniprot_index.xml
diffstat 2 files changed, 18 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Thu Jul 13 09:37:24 2023 +0000
+++ b/macros.xml	Fri Apr 25 13:04:50 2025 +0000
@@ -1,8 +1,19 @@
 <macros>
-    <token name="@TOOL_VERSION@">0.12</token>
+    <token name="@TOOL_VERSION@">0.13</token>
+    <token name="@VERSION_SUFFIX@">0</token>
     <xml name="citation">
         <citations>
             <citation type="doi">10.1093/bioinformatics/btad014</citation> 
         </citations>
     </xml>
-</macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">miniprot</requirement>
+        </requirements>
+    </xml>
+    <xml name="xrefs">
+        <xrefs>
+            <xref type="bio.tools">miniprot</xref>
+        </xrefs>
+    </xml>
+</macros>
\ No newline at end of file
--- a/miniprot_index.xml	Thu Jul 13 09:37:24 2023 +0000
+++ b/miniprot_index.xml	Fri Apr 25 13:04:50 2025 +0000
@@ -1,13 +1,12 @@
-<tool id="miniprot_index" name="Miniprot index" version="@TOOL_VERSION@+galaxy0" profile="21.05">
+<tool id="miniprot_index" name="Miniprot index" version="@TOOL_VERSION@+galaxy1" profile="21.05">
     <description>build a genome index for miniprot</description>
     <macros>
         <import>macros.xml</import>
     </macros>
-    <requirements>
-        <requirement type="package" version="@TOOL_VERSION@">miniprot</requirement>
-    </requirements>
+    <expand macro="xrefs"/>
+    <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[
-        miniprot -d '$output_index' '$input_genome'
+        miniprot -t \${GALAXY_SLOTS:-1} -d '$output_index' '$input_genome'
     ]]></command>
     <inputs>
         <param name="input_genome" type="data" format="fasta,fasta.gz" label="Genomic sequence (FASTA)" help="Genomic contigs / scaffolds in FASTA format" />
@@ -32,4 +31,4 @@
         .. _miniprot: https://github.com/lh3/miniprot
     ]]></help>
     <expand macro="citation"></expand>
-</tool>
\ No newline at end of file
+</tool>