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comparison minimap2.xml @ 4:cd71cf88d971 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit d467ba21d5a83a68e87625c9e9157b37eac03eda-dirty
author iuc
date Fri, 03 Nov 2017 17:22:05 -0400
parents acb6d016cabe
children 3875e9b17ca6
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3:acb6d016cabe 4:cd71cf88d971
10 <![CDATA[ 10 <![CDATA[
11 #if '$reference_source.reference_source_selector == 'history': 11 #if '$reference_source.reference_source_selector == 'history':
12 ln -f -s '$reference_source.ref_file' reference.fa && 12 ln -f -s '$reference_source.ref_file' reference.fa &&
13 #else: 13 #else:
14 ln -f -s '$reference_source.ref_file.fields.path' reference.fa 14 ln -f -s '$reference_source.ref_file.fields.path' reference.fa
15 #end if
15 minimap2 -a 16 minimap2 -a
16 -x $analysis_type_selector 17 -x $analysis_type_selector
17 ## indexing options 18 ## indexing options
18 #if $indexing_options.k: 19 #if $indexing_options.k:
19 -k $indexing_options.k 20 -k $indexing_options.k