Mercurial > repos > iuc > minimap2
comparison minimap2.xml @ 3:acb6d016cabe draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit d467ba21d5a83a68e87625c9e9157b37eac03eda-dirty
| author | iuc |
|---|---|
| date | Fri, 03 Nov 2017 17:15:02 -0400 |
| parents | 9b44afd426fd |
| children | cd71cf88d971 |
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| 2:fd6251adf77b | 3:acb6d016cabe |
|---|---|
| 6 <requirement type="package" version="1.6">samtools</requirement> | 6 <requirement type="package" version="1.6">samtools</requirement> |
| 7 </requirements> | 7 </requirements> |
| 8 <version_command>minimap2 --version</version_command> | 8 <version_command>minimap2 --version</version_command> |
| 9 <command> | 9 <command> |
| 10 <![CDATA[ | 10 <![CDATA[ |
| 11 ln -f -s '$reference_source.ref_file' reference.fa && | 11 #if '$reference_source.reference_source_selector == 'history': |
| 12 ln -f -s '$reference_source.ref_file' reference.fa && | |
| 13 #else: | |
| 14 ln -f -s '$reference_source.ref_file.fields.path' reference.fa | |
| 12 minimap2 -a | 15 minimap2 -a |
| 13 -x $analysis_type_selector | 16 -x $analysis_type_selector |
| 14 ## indexing options | 17 ## indexing options |
| 15 #if $indexing_options.k: | 18 #if $indexing_options.k: |
| 16 -k $indexing_options.k | 19 -k $indexing_options.k |