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comparison minimap2.xml @ 6:4d84d86b368e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit d467ba21d5a83a68e87625c9e9157b37eac03eda-dirty
author iuc
date Fri, 03 Nov 2017 17:26:44 -0400
parents 3875e9b17ca6
children 831dcb48efa1
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5:3875e9b17ca6 6:4d84d86b368e
9 <command> 9 <command>
10 <![CDATA[ 10 <![CDATA[
11 #if $reference_source.reference_source_selector == 'history': 11 #if $reference_source.reference_source_selector == 'history':
12 ln -f -s '$reference_source.ref_file' reference.fa && 12 ln -f -s '$reference_source.ref_file' reference.fa &&
13 #else: 13 #else:
14 ln -f -s '$reference_source.ref_file.fields.path' reference.fa 14 ln -f -s '$reference_source.ref_file.fields.path' reference.fa &&
15 #end if 15 #end if
16 minimap2 -a 16 minimap2 -a
17 -x $analysis_type_selector 17 -x $analysis_type_selector
18 ## indexing options 18 ## indexing options
19 #if $indexing_options.k: 19 #if $indexing_options.k: