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comparison minimap2.xml @ 5:3875e9b17ca6 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit d467ba21d5a83a68e87625c9e9157b37eac03eda-dirty
author iuc
date Fri, 03 Nov 2017 17:24:24 -0400
parents cd71cf88d971
children 4d84d86b368e
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4:cd71cf88d971 5:3875e9b17ca6
6 <requirement type="package" version="1.6">samtools</requirement> 6 <requirement type="package" version="1.6">samtools</requirement>
7 </requirements> 7 </requirements>
8 <version_command>minimap2 --version</version_command> 8 <version_command>minimap2 --version</version_command>
9 <command> 9 <command>
10 <![CDATA[ 10 <![CDATA[
11 #if '$reference_source.reference_source_selector == 'history': 11 #if $reference_source.reference_source_selector == 'history':
12 ln -f -s '$reference_source.ref_file' reference.fa && 12 ln -f -s '$reference_source.ref_file' reference.fa &&
13 #else: 13 #else:
14 ln -f -s '$reference_source.ref_file.fields.path' reference.fa 14 ln -f -s '$reference_source.ref_file.fields.path' reference.fa
15 #end if 15 #end if
16 minimap2 -a 16 minimap2 -a