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comparison macros.xml @ 19:11ef1ee4282c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 3617059cec3cc200dc22450347c070c4207b8852"
author iuc
date Fri, 28 May 2021 21:09:21 +0000
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children bb2c5a19ecbd
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18:0969cc2ddf5f 19:11ef1ee4282c
1 <macros>
2 <token name="@TOOL_VERSION@">2.20</token>
3 <token name="@GALAXY_TOOL_VERSION@">galaxy0</token>
4 <xml name="edam_ontology">
5 <edam_topics>
6 <edam_topic>topic_0102</edam_topic>
7 </edam_topics>
8 <edam_operations>
9 <edam_operation>operation_0292</edam_operation>
10 </edam_operations>
11 </xml>
12 <xml name="requirements">
13 <requirements>
14 <requirement type="package" version="@TOOL_VERSION@">minimap2</requirement>
15 <requirement type="package" version="1.12">samtools</requirement>
16 </requirements>
17 </xml>
18 <xml name="pe_anaylsis_fixed_selector">
19 <param name="analysis_type_selector" type="select"
20 label="Presets for PE reads alignment"
21 help="These are the minimap2 preset options for PE alignment of short reads. You can customize these and other settings in the indexing, mapping and alignment options sections below.">
22 <option value="sr">Short reads without splicing (-k21 -w11 --sr -F800 -A2 -B8 -O12,32 -E2,1 -r50 -p.5 -N20 -f1000,5000 -n2 -m20 -s40 -g200 -2K50m --heap-sort=yes --secondary=no) (sr)</option>
23 </param>
24 </xml>
25 <xml name="citations">
26 <citations>
27 <citations>
28 <citation type="doi">10.1093/bioinformatics/btp324</citation>
29 <citation type="doi">10.1093/bioinformatics/btp698</citation>
30 <citation type="bibtex">@misc{1303.3997,
31 Author = {Heng Li},
32 Title = {Minimap2: fast pairwise alignment for long nucleotide sequences},
33 Year = {2017},
34 Eprint = {arXiv:1708.01492},
35 url = {https://arxiv.org/abs/1708.01492},
36 }</citation>
37 </citations>
38 </citations>
39 </xml>
40 </macros>