Mercurial > repos > iuc > miniasm
comparison miniasm.xml @ 2:1c0f4a5f73f0 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/miniasm commit d225098ffed70a721aa688a57b7fe42815a9f042"
| author | iuc |
|---|---|
| date | Thu, 03 Sep 2020 16:19:55 +0000 |
| parents | 4e1381e3d582 |
| children | fc4141fec0c2 |
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| 1:4e1381e3d582 | 2:1c0f4a5f73f0 |
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| 85 <help><![CDATA[ | 85 <help><![CDATA[ |
| 86 Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings | 86 Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings |
| 87 (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, | 87 (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, |
| 88 miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig | 88 miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig |
| 89 sequences. Thus the per-base error rate is similar to the raw input reads. | 89 sequences. Thus the per-base error rate is similar to the raw input reads. |
| 90 | |
| 91 NOTE: This tool may take a long time depending on the size and characteristics of your dataset. | |
| 90 ]]></help> | 92 ]]></help> |
| 91 <citations> | 93 <citations> |
| 92 <citation type="doi">10.1093/bioinformatics/btw152</citation> | 94 <citation type="doi">10.1093/bioinformatics/btw152</citation> |
| 93 </citations> | 95 </citations> |
| 94 </tool> | 96 </tool> |