Mercurial > repos > iuc > migmap

diff migmap.xml @ 2:39a143860749 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/migmap commit 60e2302cfac90d0c909ef61815aaaafaaad5816a
author iuc
date Mon, 17 Jun 2019 07:52:51 -0400
parents eb806186aa93
children 4570e5e2b4b4
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--- a/migmap.xml	Sat Aug 04 12:21:58 2018 -0400
+++ b/migmap.xml	Mon Jun 17 07:52:51 2019 -0400
@@ -6,8 +6,10 @@
     </requirements>
     <command detect_errors='exit_code'><![CDATA[
 export IGBLAST_PATH=\$(dirname \$(which igblastn)) &&
-mkdir temp_db &&
-ln -s "\${IGBLAST_PATH}/../share/igblast/" ./temp_db/ &&
+mkdir -p temp_db/igblast &&
+ln -s "\${IGBLAST_PATH}/../share/igblast/bin/" ./temp_db/igblast &&
+ln -s "\${IGBLAST_PATH}/../share/igblast/internal_data/" ./temp_db/igblast &&
+ln -s "\${IGBLAST_PATH}/../share/igblast/optional_file/" ./temp_db/igblast &&
 
 #if $input.is_of_type('fasta') :
     ln -s '$input' in.fa &&