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annotate test-data/test_stop_codon.out @ 6:8540e2e45352 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/migmap commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7"
author iuc
date Wed, 01 Sep 2021 07:38:25 +0000
parents cbf4a6ffc369
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
1 read.header cdr3nt cdr3aa cdr.insert.qual mutations.qual v.segment d.segment j.segment cdr1.start.in.read cdr1.end.in.read cdr2.start.in.read cdr2.end.in.read cdr3.start.in.read cdr3.end.in.read v.end.in.cdr3 d.start.in.cdr3 d.end.in.cdr3 j.start.in.cdr3 v.del d.del.5 d.del.3 j.del mutations.nt.FR1 mutations.nt.CDR1 mutations.nt.FR2 mutations.nt.CDR2 mutations.nt.FR3 mutations.nt.CDR3 mutations.nt.FR4 rc complete has.cdr3 in.frame no.stop mutations.aa.FR1 mutations.aa.CDR1 mutations.aa.FR2 mutations.aa.CDR2 mutations.aa.FR3 mutations.aa.CDR3 mutations.aa.FR4 pol.v pol.d.5 pol.d.3 pol.j canonical contignt
cbf4a6ffc369 planemo upload for repository https://github.com/mikessh/migmap commit 6d79114dd74ef2ee3071a100d1e8cd6d2df50caa
iuc
parents:
diff changeset
2 >AACATAGTAAATCAGTC|PRCONS=Human-IGHA|SEQORIENT=F|CREGION=Human-TRA-InternalC|CONSCOUNT=1|DUPCOUNT=1 . . IGHV4-39*05 IGHD2/OR15-2a*01 IGHJ4*01 215 216 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 S55:C>A,S57:C>G,S62:C>T,S63:T>A,S64:G>C false false false true false S18:S>Y,S19:L>V,S20:T>T,S21:C>T,S21:C>T -1 -1 -1 -1 false NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCCCGTACGTCACTACCACTGTCTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN