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comparison microsatbed.xml @ 3:a1336aae0d6d draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/microsatbed commit 891fc6321cd94c9a63c880d75989d79521f1a9b6
author iuc
date Sat, 14 Sep 2024 12:16:51 +0000
parents e2ae68224857
children
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2:e2ae68224857 3:a1336aae0d6d
1 1
2 <tool id="microsatbed" name="STR to bed" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05"> 2 <tool id="microsatbed" name="STR to bed" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="22.05">
3 <description>Short Tandem Repeats to bed features from fasta</description> 3 <description>Short Tandem Repeats to bed features from fasta</description>
4 <macros> 4 <macros>
5 <token name="@TOOL_VERSION@">1.3.3</token> 5 <token name="@TOOL_VERSION@">1.3.3</token>
6 <token name="@VERSION_SUFFIX@">0</token> 6 <token name="@VERSION_SUFFIX@">1</token>
7 <token name="@PYTHON_VERSION@">3.12.3</token> 7 <token name="@PYTHON_VERSION@">3.12.3</token>
8 <macro name="subsetmacro"> 8 <macro name="subsetmacro">
9 <param name="subset" type="select" label="Select at least 1 specific motif length to report" 9 <param name="subset" type="select" label="Select at least 1 specific motif length to report"
10 help="Bed features will be output for every motif of the selected length(s) with the minimum required repeats or more" multiple="true"> 10 help="Bed features will be output for every motif of the selected length(s) with the minimum required repeats or more" multiple="true">
11 <option value="--di" selected="true">All dimers (AC,AG,AT,...)</option> 11 <option value="--di" selected="true">All dimers (AC,AG,AT,...)</option>
215 <param name="dimin" value="1"/> 215 <param name="dimin" value="1"/>
216 <param name="trimin" value="20"/> 216 <param name="trimin" value="20"/>
217 <param name="tetramin" value="20"/> 217 <param name="tetramin" value="20"/>
218 <param name="pentamin" value="20"/> 218 <param name="pentamin" value="20"/>
219 <param name="hexamin" value="20"/> 219 <param name="hexamin" value="20"/>
220 <output name="bed" value="dibed_wig_sample" compare="sim_size" delta="10"> 220 <output name="bed" value="dibed_indexed_sample" compare="sim_size" delta="10">
221 <assert_contents> 221 <assert_contents>
222 <has_size value="73544" delta="10" /> 222 <has_size value="67559" delta="10" />
223 </assert_contents> 223 </assert_contents>
224 </output> 224 </output>
225 </test> 225 </test>
226 </tests> 226 </tests>
227 <help><![CDATA[ 227 <help><![CDATA[