Mercurial > repos > iuc > microsatbed
comparison test-data/all_fasta.loc @ 0:dee16d45a2a9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/microsatbed commit 275acb787c01484c6e435c8864090d377c3fde75
| author | iuc |
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| date | Sun, 21 Jul 2024 07:18:47 +0000 |
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| -1:000000000000 | 0:dee16d45a2a9 |
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| 1 #Your all_fasta.loc file should contain an entry for each individual | |
| 2 #fasta file. So there will be multiple fasta files for each build, | |
| 3 #such as with hg19 above. | |
| 4 #This file lists the locations and dbkeys of all the fasta files | |
| 5 #under the "genome" directory (a directory that contains a directory | |
| 6 #for each build). The script extract_fasta.py will generate the file | |
| 7 #all_fasta.loc. This file has the format (white space characters are | |
| 8 #TAB characters): | |
| 9 # | |
| 10 #<unique_build_id> <dbkey> <display_name> <file_path> | |
| 11 # | |
| 12 #So, all_fasta.loc could look something like this: | |
| 13 # | |
| 14 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa | |
| 15 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa | |
| 16 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa | |
| 17 # | |
| 18 #Your all_fasta.loc file should contain an entry for each individual | |
| 19 #fasta file. So there will be multiple fasta files for each build, | |
| 20 #such as with hg19 above. | |
| 21 # | |
| 22 hgtest hgtest hgtest ${__HERE__}/humsamp.fa |