Mercurial > repos > iuc > metaphlan

diff metaphlan.xml @ 10:392430381492 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metaphlan/ commit 081635c7e118b90aae323f8e41530a1d827e4860
author iuc
date Fri, 20 Sep 2024 20:13:16 +0000
parents f0ca613c512a
children 75c7ed7d4ff2
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--- a/metaphlan.xml	Sun Sep 08 06:57:40 2024 +0000
+++ b/metaphlan.xml	Fri Sep 20 20:13:16 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="metaphlan" name="MetaPhlAn" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
+<tool id="metaphlan" name="MetaPhlAn" version="@TOOL_VERSION@+galaxy3" profile="@PROFILE@">
     <description>to profile the composition of microbial communities</description>
     <macros>
         <import>macros.xml</import>
@@ -77,7 +77,7 @@
         #else if $full_ext.endswith("bz2")
             bzcat '$inputs.in.raw_in.in_f' > 'in_f' && 
             bzcat '$inputs.in.raw_in.in_r' > 'in_r' &&
-            #set file_path="-1 in_f -2 in_r"
+        #else:
             ln -s '$inputs.in.raw_in.in_f' 'in_f' &&
             ln -s '$inputs.in.raw_in.in_r' 'in_r' &&
         #end if