Mercurial > repos > iuc > metabat2
changeset 3:55a1b03696bf draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metabat2/ commit 37e664b4211a39ac3dba2adb871c0b0ec80a4215
| author | iuc |
|---|---|
| date | Sat, 25 Jan 2025 21:15:49 +0000 |
| parents | 4a4a2b21a89c |
| children | |
| files | macros.xml metabat2.xml test-data/jgi_output1.tabular test-data/jgi_output2.tabular test-data/jgi_output_depth1.tabular |
| diffstat | 5 files changed, 11 insertions(+), 11 deletions(-) [+] |
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--- a/macros.xml Tue Aug 02 09:39:22 2022 +0000 +++ b/macros.xml Sat Jan 25 21:15:49 2025 +0000 @@ -1,7 +1,12 @@ <macros> - <token name="@TOOL_VERSION@">2.15</token> - <token name="@VERSION_SUFFIX@">2</token> + <token name="@TOOL_VERSION@">2.17</token> + <token name="@VERSION_SUFFIX@">0</token> <token name="@PROFILE@">21.01</token> + <xml name="biotools"> + <xrefs> + <xref type="bio.tools">MetaBAT_2</xref> + </xrefs> + </xml> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">metabat2</requirement>
--- a/metabat2.xml Tue Aug 02 09:39:22 2022 +0000 +++ b/metabat2.xml Sat Jan 25 21:15:49 2025 +0000 @@ -3,6 +3,7 @@ <macros> <import>macros.xml</import> </macros> + <expand macro="biotools"/> <expand macro="requirements"/> <command detect_errors="exit_code"><![CDATA[ mkdir bins && @@ -77,14 +78,14 @@ </section> </inputs> <outputs> - <collection name="bins" type="list" label="${tool.name} on ${on_string}: Bins"> + <collection name="bins" type="list" label="${tool.name} on ${on_string}: Bin sequences"> <filter>not out['saveCls'] and not out['onlyLabel']</filter> <discover_datasets pattern="bin\.(?P<designation>\d*)\.fa" format="fasta" directory="bins"/> </collection> - <data name="bin_saveCls" format="tabular" from_work_dir="bins/bin" label="${tool.name} on ${on_string}: Bins"> + <data name="bin_saveCls" format="tabular" from_work_dir="bins/bin" label="${tool.name} on ${on_string}: Bins with cluster memberships"> <filter>out['saveCls'] and not out['onlyLabel']</filter> </data> - <collection name="bin_onlyLabel" type="list" label="${tool.name} on ${on_string}: Bins"> + <collection name="bin_onlyLabel" type="list" label="${tool.name} on ${on_string}: Bin labels"> <filter>not out['saveCls'] and out['onlyLabel']</filter> <discover_datasets pattern="bin\.(?P<designation>\d*)" format="tabular" directory="bins"/> </collection>
--- a/test-data/jgi_output1.tabular Tue Aug 02 09:39:22 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,2 +0,0 @@ -contigName contigLen totalAvgDepth -gi|251831106|ref|NC_012920.1| 16569 0.667885 0.667885 50.6321