# HG changeset patch
# User iuc
# Date 1737839749 0
# Node ID 55a1b03696bf842dc40943c3739e638919a1bcd0
# Parent  4a4a2b21a89c54d96da04e33c0119c8abb2ae21f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/metabat2/ commit 37e664b4211a39ac3dba2adb871c0b0ec80a4215

diff -r 4a4a2b21a89c -r 55a1b03696bf macros.xml
--- a/macros.xml	Tue Aug 02 09:39:22 2022 +0000
+++ b/macros.xml	Sat Jan 25 21:15:49 2025 +0000
@@ -1,7 +1,12 @@
 <macros>
-    <token name="@TOOL_VERSION@">2.15</token>
-    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@TOOL_VERSION@">2.17</token>
+    <token name="@VERSION_SUFFIX@">0</token>
     <token name="@PROFILE@">21.01</token>
+    <xml name="biotools">
+        <xrefs>
+            <xref type="bio.tools">MetaBAT_2</xref>
+        </xrefs>
+    </xml>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">metabat2</requirement>
diff -r 4a4a2b21a89c -r 55a1b03696bf metabat2.xml
--- a/metabat2.xml	Tue Aug 02 09:39:22 2022 +0000
+++ b/metabat2.xml	Sat Jan 25 21:15:49 2025 +0000
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[
 mkdir bins &&
@@ -77,14 +78,14 @@
         </section>
     </inputs>
     <outputs>
-        <collection name="bins" type="list" label="${tool.name} on ${on_string}: Bins">
+        <collection name="bins" type="list" label="${tool.name} on ${on_string}: Bin sequences">
             <filter>not out['saveCls'] and not out['onlyLabel']</filter>
             <discover_datasets pattern="bin\.(?P&lt;designation&gt;\d*)\.fa" format="fasta" directory="bins"/>
         </collection>
-        <data name="bin_saveCls" format="tabular" from_work_dir="bins/bin" label="${tool.name} on ${on_string}: Bins">
+        <data name="bin_saveCls" format="tabular" from_work_dir="bins/bin" label="${tool.name} on ${on_string}: Bins with cluster memberships">
             <filter>out['saveCls'] and not out['onlyLabel']</filter>
         </data>
-        <collection name="bin_onlyLabel" type="list" label="${tool.name} on ${on_string}: Bins">
+        <collection name="bin_onlyLabel" type="list" label="${tool.name} on ${on_string}: Bin labels">
             <filter>not out['saveCls'] and out['onlyLabel']</filter>
             <discover_datasets pattern="bin\.(?P&lt;designation&gt;\d*)" format="tabular" directory="bins"/>
         </collection>
diff -r 4a4a2b21a89c -r 55a1b03696bf test-data/jgi_output1.tabular
--- a/test-data/jgi_output1.tabular	Tue Aug 02 09:39:22 2022 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,2 +0,0 @@
-contigName	contigLen	totalAvgDepth	
-gi|251831106|ref|NC_012920.1|	16569	0.667885	0.667885	50.6321
diff -r 4a4a2b21a89c -r 55a1b03696bf test-data/jgi_output2.tabular
--- a/test-data/jgi_output2.tabular	Tue Aug 02 09:39:22 2022 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,2 +0,0 @@
-contigName	contigLen	totalAvgDepth	
-gi|251831106|ref|NC_012920.1|	16569	1.33577	0.667885	50.6321	0.667885	50.6321
diff -r 4a4a2b21a89c -r 55a1b03696bf test-data/jgi_output_depth1.tabular
--- a/test-data/jgi_output_depth1.tabular	Tue Aug 02 09:39:22 2022 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,2 +0,0 @@
-contigName	contigLen	totalAvgDepth	
-NC_002945.4 Mycobacterium bovis AF2122/97 genome assembly, chromosome: Mycobacterium_bovis_AF2122/97	7000	0	0	0