Mercurial > repos > iuc > meryl_histogram_kmers

diff macros.xml @ 0:16b7b0d0eaea draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meryl commit a3a16149db71f9b72dd7e949df0db08797637312
author iuc
date Tue, 08 Oct 2024 16:43:08 +0000
parents
children 9b6d82198a62
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Tue Oct 08 16:43:08 2024 +0000
@@ -0,0 +1,49 @@
+<macros>
+    <token name="@TOOL_VERSION@">1.3</token>
+    <token name="@GALAXY_TOOL_VERSION@">galaxy</token>
+    <token name="@SUFFIX_VERSION@">7</token>
+    <token name="@PROFILE@">22.01</token>
+    <xml name="edam_ontology">
+        <edam_topics>                                                                                  
+            <edam_topic>topic_0196</edam_topic>
+        </edam_topics>
+        <edam_operations>
+            <edam_operation>operation_0525</edam_operation>
+        </edam_operations>
+    </xml>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="1.1">merqury</requirement>
+            <requirement type="package" version="@TOOL_VERSION@">meryl</requirement>
+            <requirement type="package" version="1.34">tar</requirement>
+            <requirement type="package" version="2.8">pigz</requirement>
+        </requirements>
+    </xml>
+    <xml name="meryldb_archive_assumptions">
+        <has_archive_member path="^[^/]+.meryl$" n="1"/>  <!-- folder also counts -->
+        <has_archive_member path="[^/]+.meryl/merylIndex" n="1" all="true">
+            <has_size min="1"/>
+        </has_archive_member>
+        <has_archive_member path="[^/]+.meryl/.*\.merylIndex" n="64" all="true">
+            <has_size min="1"/>
+        </has_archive_member>
+        <has_archive_member path="[^/]+.meryl/.*\.merylData" n="64" all="true">
+            <!-- <has_size min="1"/> seems to be 0 sometimes -->
+        </has_archive_member>
+        <has_archive_member path=".*" n="130"/>
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">                                                                   
+                @misc{githubMeryl,                                                                 
+                author = {Arang Rhie, Brian P. Walez, Sergey Koren, Adam M. Phillippy},
+                year = {2020},                                                                 
+                title = {Meryl},                                                        
+                publisher = {GitHub},
+                journal = {GitHub repository},                                               
+                url = {https://github.com/marbl/meryl},                        
+                }                                                                    
+            </citation>
+        </citations>
+    </xml>
+</macros>