Mercurial > repos > iuc > meryl_histogram_kmers

comparison macros.xml @ 1:9b6d82198a62 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/meryl commit 6935ad9dddbbb913817552d682d0b2208481dc7f
author iuc
date Sun, 09 Nov 2025 18:35:46 +0000
parents 16b7b0d0eaea
children
comparison
equal deleted inserted replaced
0:16b7b0d0eaea 1:9b6d82198a62
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">1.3</token> 2 <token name="@TOOL_VERSION@">1.4.1</token>
3 <token name="@GALAXY_TOOL_VERSION@">galaxy</token> 3 <token name="@GALAXY_TOOL_VERSION@">galaxy</token>
4 <token name="@SUFFIX_VERSION@">7</token> 4 <token name="@SUFFIX_VERSION@">0</token>
5 <token name="@PROFILE@">22.01</token> 5 <token name="@PROFILE@">22.01</token>
6 <xml name="edam_ontology"> 6 <xml name="edam_ontology">
7 <edam_topics> 7 <edam_topics>
8 <edam_topic>topic_0196</edam_topic> 8 <edam_topic>topic_0196</edam_topic>
9 </edam_topics> 9 </edam_topics>
16 <requirement type="package" version="1.1">merqury</requirement> 16 <requirement type="package" version="1.1">merqury</requirement>
17 <requirement type="package" version="@TOOL_VERSION@">meryl</requirement> 17 <requirement type="package" version="@TOOL_VERSION@">meryl</requirement>
18 <requirement type="package" version="1.34">tar</requirement> 18 <requirement type="package" version="1.34">tar</requirement>
19 <requirement type="package" version="2.8">pigz</requirement> 19 <requirement type="package" version="2.8">pigz</requirement>
20 </requirements> 20 </requirements>
21 </xml>
22 <xml name="kmer_param">
23 <conditional name="options_kmer_size">
24 <param name="kmer_size" type="select" label="K-mer size selector">
25 <option value="provide">Set a k-mer size</option>
26 <option value="estimate">Estimate the best k-mer size</option>
27 </param>
28 <when value="provide">
29 <param name="input_kmer_size" type="integer" min="1" value="" label="K-mer size" help="For a human genome, the best k-mer size is k=21 for both haploid (3.1G) or diploid (6.2G).."/>
30 </when>
31 <when value="estimate">
32 <param name="genome_size" type="integer" min="1000" max="70000000000" value="1000" label="Genome size" help="Haploid genome size or diploid genome size, depending on what we evaluate. In bp. Only required if the k-mer size is not provided."/>
33 <param name="collision_rate" type="float" min="0.0001" max="0.01" value="0.001" label="Tolerable collision rate" help="Tolerable collision rate. By default is 0.001."/>
34 </when>
35 </conditional>
21 </xml> 36 </xml>
22 <xml name="meryldb_archive_assumptions"> 37 <xml name="meryldb_archive_assumptions">
23 <has_archive_member path="^[^/]+.meryl$" n="1"/> <!-- folder also counts --> 38 <has_archive_member path="^[^/]+.meryl$" n="1"/> <!-- folder also counts -->
24 <has_archive_member path="[^/]+.meryl/merylIndex" n="1" all="true"> 39 <has_archive_member path="[^/]+.meryl/merylIndex" n="1" all="true">
25 <has_size min="1"/> 40 <has_size min="1"/>