Mercurial > repos > iuc > merquryfk_asmplot

comparison macros.xml @ 0:f04eea616f79 draft

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planemo upload for repository https://github.com/thegenemyers/MERQURY.FK commit a3bca7925574e058336e55d80e8390e95af770a7
author iuc
date Tue, 25 Feb 2025 13:34:37 +0000
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-1:000000000000 0:f04eea616f79
1 <macros>
2 <token name="@VERSION@">1.1.1</token>
3 <token name="@VERSION_SUFFIX@">0</token>
4 <token name="@PLOTS@">
5 -w${width}
6 -h${height}
7 </token>
8 <token name="@MEASURE@">
9 #if $measure.measurement == "relative":
10 -x${max_x}
11 -y${max_y}
12 #else:
13 -X${max_x}
14 -Y${max_y}
15 #end if
16 </token>
17 <token name="@GRAPHS@">
18 #for $graph in $graphs:
19 $graph
20 #end for
21 </token>
22 <xml name="requirements">
23 <requirements>
24 <requirement type="package" version="@VERSION@">merquryfk</requirement>
25 </requirements>
26 </xml>
27 <xml name="sizes">
28 <conditional name="measure">
29 <param name="measurement" type="select" label="How would you like to set max value?">
30 <option value="absolute">Absolute terms</option>
31 <option value="relative">Relative to peak</option>
32 </param>
33 <when value="absolute">
34 <param name="max_x" type="integer" min="0" label="Max X value" optional="true" value="2"/>
35 <param name="max_y" type="integer" min="0" label="Max Y value" optional="true" value="1"/>
36 </when>
37 <when value="relative">
38 <param name="max_x" type="float" min="0" label="Max X multiplier" optional="true" value="2.1" help="Sets max value as assigned multiple of count 'peak' away from origin"/>
39 <param name="max_y" type="float" min="0" label="Max Y multiplier" optional="true" value="1.1" help="Sets max value as assigned multiple of count 'peak' away from origin"/>
40 </when>
41 </conditional>
42 </xml>
43 <xml name="plots">
44 <param name="width" label="Width of plots" type="float" optional="true" value="6.0" min="0"/>
45 <param name="height" label="Height of plots" type="float" optional="true" value="4.5" min="0"/>
46 </xml>
47 <xml name="graphs">
48 <param name="graphs" label="What graphs would you like to generate?" type="select" multiple="true" help="If none are selected, all will be generated">
49 <option value="-l">Line plot</option>
50 <option value="-f">Fill plot</option>
51 <option value="-s">Stack plot</option>
52 <option value="-z">K-mer counts unique to assembly</option>
53 </param>
54 </xml>
55 <xml name="graphs2">
56 <param name="graphs" label="What graphs would you like to generate?" type="select" multiple="true" help="If none are selected, all will be generated">
57 <option value="-l">Line plot</option>
58 <option value="-f">Fill plot</option>
59 <option value="-s">Stack plot</option>
60 </param>
61 </xml>
62 <xml name="pdf">
63 <param argument="-pdf" type="boolean" label="PDF Output" truevalue="-pdf" falsevalue="" help="Output in pdf format if true, png if false"/>
64 </xml>
65 <xml name="description">
66 <description>part of MERQURY.FK</description>
67 </xml>
68 <xml name="citation">
69 <citations>
70 <citation type="bibtex">
71 @misc{githubMERQURY.FK.
72 author = {Eugene Myers},
73 year = {2023},
74 title = {MERQURY.FK},
75 publisher = {GitHub},
76 journal = {GitHub repository},
77 url = {https://github.com/thegenemyers/MERQURY.FK},
78 }
79 </citation>
80 </citations>
81 </xml>
82 </macros>