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comparison meme.xml @ 10:9fed374977a4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit e2cf796f991cbe8c96e0cc5a0056b7255ac3ad6b
author iuc
date Thu, 17 May 2018 14:09:16 -0400
parents 5955d6673523
children 15c14d1dea48
comparison
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9:d15b956366dd 10:9fed374977a4
1 <tool id="meme_meme" name="MEME" version="@WRAPPER_VERSION@.0"> 1 <tool id="meme_meme" name="MEME" version="@WRAPPER_VERSION@.0">
2 <description>- Multiple Em for Motif Elicitation</description> 2 <description>- Multiple EM for Motif Elicitation</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
278 <tests> 278 <tests>
279 <test> 279 <test>
280 <param name="input1" value="meme_input_1.fasta" ftype="fasta" dbkey="hg19"/> 280 <param name="input1" value="meme_input_1.fasta" ftype="fasta" dbkey="hg19"/>
281 <param name="options_type_selector" value="basic"/> 281 <param name="options_type_selector" value="basic"/>
282 <param name="non_commercial_use" value="True"/> 282 <param name="non_commercial_use" value="True"/>
283 <output name="html_outfile" file="meme_output_html_1.html" compare="contains"/> 283 <output name="html_outfile" file="meme_output_test1.html" lines_diff="20"/>
284 <output name="txt_outfile" file="meme_output_txt_1.txt" lines_diff="12"/> 284 <output name="txt_outfile" file="meme_output_test1.txt" lines_diff="12"/>
285 <output name="xml_outfile" file="meme_output_xml_1.xml" lines_diff="8"/> 285 <output name="xml_outfile" file="meme_output_test1.xml" lines_diff="8"/>
286 </test> 286 </test>
287 <test> 287 <test>
288 <param name="input1" value="meme_input_1.fasta" ftype="fasta" dbkey="hg19"/> 288 <param name="input1" value="meme_input_1.fasta" ftype="fasta" dbkey="hg19"/>
289 <param name="options_type_selector" value="advanced"/> 289 <param name="options_type_selector" value="advanced"/>
290 <param name="plib" value="prior30.plib" ftype="txt"/> 290 <param name="plib" value="prior30.plib" ftype="txt"/>
291 <param name="non_commercial_use" value="True"/> 291 <param name="non_commercial_use" value="True"/>
292 <output name="html_outfile" file="meme_output_html_2.html" compare="contains"/> 292 <output name="html_outfile" file="meme_output_test2.html" lines_diff="20"/>
293 <output name="txt_outfile" file="meme_output_txt_2.txt" lines_diff="12"/> 293 <output name="txt_outfile" file="meme_output_test2.txt" lines_diff="12"/>
294 <output name="xml_outfile" file="meme_output_xml_2.xml" lines_diff="8"/> 294 <output name="xml_outfile" file="meme_output_test2.xml" lines_diff="8"/>
295 </test> 295 </test>
296 </tests> 296 </tests>
297 <help> 297 <help>
298 298
299 .. class:: warningmark 299 .. class:: warningmark
325 booktitle = {Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology}, 325 booktitle = {Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology},
326 pages = {28-36}, 326 pages = {28-36},
327 author = {Bailey, Timothy L. and Elkan, Charles}, 327 author = {Bailey, Timothy L. and Elkan, Charles},
328 title = {Fitting a mixture model by expectation maximization to discover motifs in biopolymers}, 328 title = {Fitting a mixture model by expectation maximization to discover motifs in biopolymers},
329 url = {https://www.aaai.org/Papers/ISMB/1994/ISMB94-004.pdf}, 329 url = {https://www.aaai.org/Papers/ISMB/1994/ISMB94-004.pdf},
330 year = {1994}, 330 year = {1994}
331 } 331 }
332 </citation> 332 </citation>
333 </citations> 333 </citations>
334 </tool> 334 </tool>