Mercurial > repos > iuc > meme_meme

annotate test-data/meme_output_html_1.html @ 3:22827eead638 draft

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Uploaded
author iuc
date Fri, 17 Jun 2016 13:12:40 -0400
parents 16752a2d49c4
children 6c731d47c3be
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
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1 <!DOCTYPE HTML>
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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2 <html>
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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3 <head>
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4 <meta charset="UTF-8">
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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5 <title>MEME</title>
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6 <script>
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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7 // @JSON_VAR data
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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8 var data = {
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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9 "program": "MEME",
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
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10 "version": "4.11.0",
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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11 "release": "Thu Nov 26 17:48:49 2015 +1000",
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
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12 "stop_reason": "Stopped because requested number of motifs (1) found.",
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
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13 "cmd": [
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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14 "meme",
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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15 "-nostatus"
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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16 ],
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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17 "options": {
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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18 "mod": "zoops",
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iuc
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19 "revcomp": false,
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iuc
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20 "nmotifs": 1,
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21 "minw": 8,
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iuc
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22 "maxw": 50,
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iuc
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23 "minsites": 2,
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iuc
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24 "maxsites": 30,
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iuc
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25 "wnsites": 0.8,
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iuc
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26 "spmap": "pam",
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27 "spfuzz": 120,
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28 "maxwords": -1,
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29 "prior": "megap",
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30 "b": 7500,
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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31 "maxiter": 50,
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iuc
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32 "distance": 1e-05,
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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33 "wg": 11,
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34 "ws": 1,
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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35 "noendgaps": false,
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iuc
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36 "substring": true
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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37 },
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
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38 "alphabet": {
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
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39 "name": "Protein",
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
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40 "like": "protein",
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
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41 "ncore": 20,
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iuc
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42 "symbols": [
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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43 {
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
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44 "symbol": "A",
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
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45 "name": "Alanine",
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
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46 "colour": "0000CC"
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iuc
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47 }, {
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
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48 "symbol": "C",
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
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49 "name": "Cysteine",
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
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50 "colour": "0000CC"
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iuc
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51 }, {
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
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52 "symbol": "D",
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
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53 "name": "Aspartic acid",
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
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54 "colour": "FF00FF"
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55 }, {
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
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56 "symbol": "E",
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iuc
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57 "name": "Glutamic acid",
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
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58 "colour": "FF00FF"
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59 }, {
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
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60 "symbol": "F",
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iuc
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61 "name": "Phenylalanine",
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iuc
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62 "colour": "0000CC"
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63 }, {
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
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64 "symbol": "G",
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65 "name": "Glycine",
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iuc
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66 "colour": "FFB300"
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67 }, {
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68 "symbol": "H",
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69 "name": "Histidine",
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iuc
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70 "colour": "FFCCCC"
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71 }, {
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72 "symbol": "I",
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73 "name": "Isoleucine",
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74 "colour": "0000CC"
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75 }, {
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76 "symbol": "K",
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77 "name": "Lysine",
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78 "colour": "CC0000"
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79 }, {
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parents:
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80 "symbol": "L",
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81 "name": "Leucine",
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82 "colour": "0000CC"
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83 }, {
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parents:
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84 "symbol": "M",
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85 "name": "Methionine",
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86 "colour": "0000CC"
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87 }, {
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parents:
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88 "symbol": "N",
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89 "name": "Asparagine",
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90 "colour": "008000"
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91 }, {
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parents:
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92 "symbol": "P",
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93 "name": "Proline",
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94 "colour": "FFFF00"
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95 }, {
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
parents:
diff changeset
96 "symbol": "Q",
16752a2d49c4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 71ac7e12419b8541746ebf8d4ba704cbbd603db1
iuc
parents:
diff changeset
97 "name": "Glutamine",