Mercurial > repos > iuc > meme_fimo

comparison fimo.xml @ 13:daf857eed38f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 5dd1dbea49bab90b13c1b5f42a730843041609b7
author iuc
date Wed, 05 Dec 2018 17:03:55 -0500
parents e37874b1f811
children 7e302e528795
comparison
equal deleted inserted replaced
12:e37874b1f811 13:daf857eed38f
21 $options_type.max_strand 21 $options_type.max_strand
22 --max-stored-scores $options_type.max_stored_scores 22 --max-stored-scores $options_type.max_stored_scores
23 23
24 #if str( $options_type.motifs_cond.motif_selector) == 'yes': 24 #if str( $options_type.motifs_cond.motif_selector) == 'yes':
25 #for $motif in $options_type.motifs_cond.motifs: 25 #for $motif in $options_type.motifs_cond.motifs:
26 --motif $motif.motif 26 --motif '$motif.motif'
27 #end for 27 #end for
28 #end if 28 #end if
29 29
30 --motif-pseudo $options_type.motif_pseudo 30 --motif-pseudo $options_type.motif_pseudo
31 $options_type.no_qvalue 31 $options_type.no_qvalue
110 <option value="yes">Yes</option> 110 <option value="yes">Yes</option>
111 </param> 111 </param>
112 <when value="no"/> 112 <when value="no"/>
113 <when value="yes"> 113 <when value="yes">
114 <repeat name="motifs" title="Supply input motif ID"> 114 <repeat name="motifs" title="Supply input motif ID">
115 <param name="motif" type="text" value="" label="Motif ID" /> 115 <param name="motif" type="text" value="" label="Specify motif by id">
116 <validator type="empty_field" />
117 <validator type="regex" message="Value may include alphanumeric characters.">[A-Za-z]+</validator>
118 </param>
116 </repeat> 119 </repeat>
117 </when> 120 </when>
118 </conditional> 121 </conditional>
119 <param name="motif_pseudo" type="float" value="0.1" argument="--motif-pseudo" 122 <param name="motif_pseudo" type="float" value="0.1" argument="--motif-pseudo"
120 label="Pseudocount to add to counts in motif matrix" 123 label="Pseudocount to add to counts in motif matrix"