Mercurial > repos > iuc > meme_fimo

comparison test-data/fimo_output_test3.xml @ 18:6f68fb7ef9f0 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
author iuc
date Sat, 09 Apr 2022 08:29:35 +0000
parents 7e302e528795
children
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17:9d36138e1a51 18:6f68fb7ef9f0
1 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 <!-- Begin document body -->
3 <fimo version="5.0.5" release="Mon Mar 18 20:12:19 2019 -0700">
4 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
5 xsi:schemaLocation= xmlns:fimo="http://noble.gs.washington.edu/schema/fimo"
6 >
7 <settings>
8 <setting name="background file name">--uniform--</setting>
9 <setting name="allow clobber">false</setting>
10 <setting name="compute q-values">true</setting>
11 <setting name="parse genomic coord.">false</setting>
12 <setting name="text only">false</setting>
13 <setting name="scan both strands">true</setting>
14 <setting name="output threshold">0.01</setting>
15 <setting name="threshold type">p-value</setting>
16 <setting name="max stored scores">100000</setting>
17 <setting name="pseudocount">0.1</setting>
18 <setting name="verbosity">2</setting>
19 <setting name="selected motif">ACTAAYH</setting>
20 </settings>
21 <sequence-data num-sequences="1" num-residues="16569" /> 1 <sequence-data num-sequences="1" num-residues="16569" />
22 <alphabet name="DNA" like="dna"> 2 <alphabet name="DNA" like="dna">
23 <letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/> 3 <letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/>
24 <letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/> 4 <letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/>
25 <letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/> 5 <letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/>