Mercurial > repos > iuc > meme_fimo

comparison test-data/fimo_output_test2.xml @ 18:6f68fb7ef9f0 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 03235f29be6368f58bc730a20d87a13cf215310f"
author iuc
date Sat, 09 Apr 2022 08:29:35 +0000
parents 7e302e528795
children
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17:9d36138e1a51 18:6f68fb7ef9f0
1 <?xml version="1.0" encoding="UTF-8" standalone="no"?>
2 <!-- Begin document body -->
3 <fimo version="5.0.5" release="Mon Mar 18 20:12:19 2019 -0700">
4 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
5 xsi:schemaLocation= xmlns:fimo="http://noble.gs.washington.edu/schema/fimo"
6 >
7 <settings>
8 <setting name="allow clobber">false</setting>
9 <setting name="compute q-values">true</setting> 1 <setting name="compute q-values">true</setting>
10 <setting name="parse genomic coord.">false</setting> 2 <setting name="parse genomic coord.">false</setting>
11 <setting name="text only">false</setting> 3 <setting name="text only">false</setting>
12 <setting name="scan both strands">true</setting> 4 <setting name="scan both strands">true</setting>
13 <setting name="output threshold">0.0001</setting> 5 <setting name="output threshold">0.0001</setting>
38 <motif name="YTAACA" alt="DREME-2" width="6" best-possible-match="TTAACA"/> 30 <motif name="YTAACA" alt="DREME-2" width="6" best-possible-match="TTAACA"/>
39 <motif name="TCTGT" alt="DREME-3" width="5" best-possible-match="TCTGT"/> 31 <motif name="TCTGT" alt="DREME-3" width="5" best-possible-match="TCTGT"/>
40 <motif name="SCCAGG" alt="DREME-4" width="6" best-possible-match="CCCAGG"/> 32 <motif name="SCCAGG" alt="DREME-4" width="6" best-possible-match="CCCAGG"/>
41 <motif name="CCAGCAY" alt="DREME-5" width="7" best-possible-match="CCAGCAC"/> 33 <motif name="CCAGCAY" alt="DREME-5" width="7" best-possible-match="CCAGCAC"/>
42 <motif name="GMATGT" alt="DREME-6" width="6" best-possible-match="GAATGT"/> 34 <motif name="GMATGT" alt="DREME-6" width="6" best-possible-match="GAATGT"/>
43 <value letter="A">0.278</value>
44 <value letter="C">0.222</value>
45 <value letter="G">0.222</value>
46 <value letter="T">0.278</value>
47 </background>
48 <cisml-file>cisml.xml</cisml-file>
49 </fimo>