Mercurial > repos > iuc > meme_fimo

comparison fimo.xml @ 6:3357222bd843 draft

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author iuc
date Thu, 07 Jul 2016 09:53:04 -0400
parents e5e9a09ac2de
children de3c73f58451
comparison
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5:6f4ba26d4659 6:3357222bd843
1 <tool id="meme_fimo" name="FIMO" version="4.11.0.3"> 1 <tool id="meme_fimo" name="FIMO" version="4.11.0.4">
2 <description>- Scan a set of sequences for motifs.</description> 2 <description>- Scan a set of sequences for motifs.</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="6.9.3">imagemagick</requirement> 4 <requirement type="package" version="6.9.3">imagemagick</requirement>
5 <requirement type="package" version="4.11.0">meme</requirement> 5 <requirement type="package" version="4.11.0">meme</requirement>
6 </requirements> 6 </requirements>
179 </when> 179 </when>
180 </conditional> 180 </conditional>
181 </actions> 181 </actions>
182 </data> 182 </data>
183 <data format="tabular" name="gff_outfile" label="${tool.name} on ${on_string} (almost-gff)"> 183 <data format="tabular" name="gff_outfile" label="${tool.name} on ${on_string} (almost-gff)">
184 <filter>options_type['output_separate_motifs'] == 'no'</filter> 184 <filter>options_type['options_type_selector'] == 'basic' or (options_type['options_type_selector'] == 'advanced' and options_type['output_separate_motifs'] == 'no')</filter>
185 <actions> 185 <actions>
186 <conditional name="fasta_type.fasta_type_selector"> 186 <conditional name="fasta_type.fasta_type_selector">
187 <when value="cached"> 187 <when value="cached">
188 <action type="metadata" name="dbkey"> 188 <action type="metadata" name="dbkey">
189 <option type="from_data_table" name="all_fasta" column="1" offset="0"> 189 <option type="from_data_table" name="all_fasta" column="1" offset="0">
194 </conditional> 194 </conditional>
195 </actions> 195 </actions>
196 </data> 196 </data>
197 <collection name="motifs" type="list" label="Motifs: ${tool.name} on ${on_string}"> 197 <collection name="motifs" type="list" label="Motifs: ${tool.name} on ${on_string}">
198 <discover_datasets pattern="(?P&lt;designation&gt;.*)" directory="output" ext="gff" visible="false" /> 198 <discover_datasets pattern="(?P&lt;designation&gt;.*)" directory="output" ext="gff" visible="false" />
199 <filter>options_type['output_separate_motifs'] == 'yes'</filter> 199 <filter>options_type['options_type_selector'] == 'advanced' and options_type['output_separate_motifs'] == 'yes'</filter>
200 </collection> 200 </collection>
201 <data format="cisml" name="xml_outfile" label="${tool.name} on ${on_string} (xml)"> 201 <data format="cisml" name="xml_outfile" label="${tool.name} on ${on_string} (xml)">
202 <actions> 202 <actions>
203 <conditional name="fasta_type.fasta_type_selector"> 203 <conditional name="fasta_type.fasta_type_selector">
204 <when value="cached"> 204 <when value="cached">