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comparison test-data/meme_output_html_2.html @ 0:315f05ef7d49 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
author iuc
date Wed, 25 Apr 2018 12:12:03 -0400
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-1:000000000000 0:315f05ef7d49
1 <!DOCTYPE HTML>
2 <html>
3 <head>
4 <meta charset="UTF-8">
5 <title>MEME</title>
6 <script>
7 // @JSON_VAR data
8 var data = {
9 "program": "MEME",
10 "stop_reason": "Stopped because requested number of motifs (1) found.",
11 "cmd": [
12 "meme",
13 ],
14 "options": {
15 "mod": "zoops",
16 "revcomp": false,
17 "nmotifs": 1,
18 "minw": 8,
19 "maxw": 50,
20 "minsites": 2,
21 "maxsites": 30,
22 "wnsites": 0.8,
23 "spmap": "uni",
24 "spfuzz": 0.5,
25 "maxwords": -1,
26 "prior": "dirichlet",
27 "b": 0.01,
28 "maxiter": 50,
29 "distance": 0.001,
30 "wg": 11,
31 "ws": 1,
32 "noendgaps": false,
33 "substring": true
34 },
35 "alphabet": {
36 "name": "DNA",
37 "like": "dna",
38 "ncore": 4,
39 "symbols": [
40 {
41 "symbol": "A",
42 "name": "Adenine",
43 "colour": "CC0000",
44 "complement": "T"
45 }, {
46 "symbol": "C",
47 "name": "Cytosine",
48 "colour": "0000CC",
49 "complement": "G"
50 }, {
51 "symbol": "G",
52 "name": "Guanine",
53 "colour": "FFB300",
54 "complement": "C"
55 }, {
56 "symbol": "T",
57 "aliases": "U",
58 "name": "Thymine",
59 "colour": "008000",
60 "complement": "A"
61 }, {
62 "symbol": "N",
63 "aliases": "X.",
64 "name": "Any base",
65 "equals": "ACGT"
66 }, {
67 "symbol": "V",
68 "name": "Not T",
69 "equals": "ACG"
70 }, {
71 "symbol": "H",
72 "name": "Not G",
73 "equals": "ACT"
74 }, {
75 "symbol": "D",
76 "name": "Not C",
77 "equals": "AGT"
78 }, {
79 "symbol": "B",
80 "name": "Not A",
81 "equals": "CGT"
82 }, {
83 "symbol": "M",
84 "name": "Amino",
85 "equals": "AC"
86 }, {
87 "symbol": "R",
88 "name": "Purine",
89 "equals": "AG"