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comparison test-data/meme_output_html_1.html @ 0:315f05ef7d49 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/meme commit 42fa6e319cf1a97330818dc8c869871a32f0e7aa
author iuc
date Wed, 25 Apr 2018 12:12:03 -0400
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1 <!DOCTYPE HTML>
2 <html>
3 <head>
4 <meta charset="UTF-8">
5 <title>MEME</title>
6 <script>
7 // @JSON_VAR data
8 var data = {
9 "program": "MEME",
10 "stop_reason": "Stopped because requested number of motifs (1) found.",
11 "cmd": [
12 "meme",
13 "-nostatus"
14 ],
15 "options": {
16 "mod": "zoops",
17 "revcomp": false,
18 "nmotifs": 1,
19 "minw": 8,
20 "maxw": 50,
21 "minsites": 2,
22 "maxsites": 30,
23 "wnsites": 0.8,
24 "spmap": "pam",
25 "spfuzz": 120,
26 "maxwords": -1,
27 "prior": "megap",
28 "b": 7500,
29 "maxiter": 50,
30 "distance": 1e-05,
31 "wg": 11,
32 "ws": 1,
33 "noendgaps": false,
34 "substring": true
35 },
36 "alphabet": {
37 "name": "Protein",
38 "like": "protein",
39 "ncore": 20,
40 "symbols": [
41 {
42 "symbol": "A",
43 "name": "Alanine",
44 "colour": "0000CC"
45 }, {
46 "symbol": "C",
47 "name": "Cysteine",
48 "colour": "0000CC"
49 }, {
50 "symbol": "D",
51 "name": "Aspartic acid",
52 "colour": "FF00FF"
53 }, {
54 "symbol": "E",
55 "name": "Glutamic acid",
56 "colour": "FF00FF"
57 }, {
58 "symbol": "F",
59 "name": "Phenylalanine",
60 "colour": "0000CC"
61 }, {
62 "symbol": "G",
63 "name": "Glycine",
64 "colour": "FFB300"
65 }, {
66 "symbol": "H",
67 "name": "Histidine",
68 "colour": "FFCCCC"
69 }, {
70 "symbol": "I",
71 "name": "Isoleucine",
72 "colour": "0000CC"
73 }, {
74 "symbol": "K",
75 "name": "Lysine",
76 "colour": "CC0000"
77 }, {
78 "symbol": "L",
79 "name": "Leucine",
80 "colour": "0000CC"
81 }, {
82 "symbol": "M",
83 "name": "Methionine",
84 "colour": "0000CC"
85 }, {
86 "symbol": "N",
87 "name": "Asparagine",
88 "colour": "008000"
89 }, {
90 "symbol": "P",
91 "name": "Proline",
92 "colour": "FFFF00"
93 }, {
94 "symbol": "Q",
95 "name": "Glutamine",