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comparison megahit_wrapper.xml @ 5:b2a905087e9c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/megahit commit 4277f95c11b67fae2007521af6473af5d09b7f1f"
author iuc
date Tue, 08 Sep 2020 08:34:00 +0000
parents 130301d9c09d
children 00f89dc38847
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4:130301d9c09d 5:b2a905087e9c
1 <?xml version='1.0' encoding='utf-8'?> 1 <?xml version='1.0' encoding='utf-8'?>
2 <tool id="megahit" name="MEGAHIT" version="@VERSION@.4"> 2 <tool id="megahit" name="MEGAHIT" version="@VERSION@.5">
3 <description>for metagenomics assembly</description> 3 <description>for metagenomics assembly</description>
4 <macros> 4 <macros>
5 <token name="@VERSION@">1.1.3</token> 5 <token name="@VERSION@">1.1.3</token>
6 </macros> 6 </macros>
7 <requirements> 7 <requirements>
8 <requirement type="package" version="@VERSION@">megahit</requirement> 8 <requirement type="package" version="@VERSION@">megahit</requirement>
9 </requirements> 9 </requirements>
10 <version_command>megahit --version</version_command> 10 <version_command>megahit --version</version_command>
11 <command detect_errors="exit_code"><![CDATA[ 11 <command detect_errors="exit_code"><![CDATA[
12 megahit 12 megahit
13 --num-cpu-threads \${GALAXY_SLOTS:-4}
13 #if $input_option.choice == 'paired' 14 #if $input_option.choice == 'paired'
14 -1 '${input_option.fastq_input1}' 15 -1 '${input_option.fastq_input1}'
15 -2 '${input_option.fastq_input2}' 16 -2 '${input_option.fastq_input2}'
16 #else if $input_option.choice == 'paired_collection' 17 #else if $input_option.choice == 'paired_collection'
17 18