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comparison test-data/1/out.log @ 0:fa268dda3c1e draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/maxbin2/ commit e62df5b9d7cdbfd5fc02f5e52bbc2f7284eee555"
author iuc
date Mon, 28 Oct 2019 19:36:33 -0400
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-1:000000000000 0:fa268dda3c1e
1 MaxBin 2.2.7
2 Input contig: /tmp/tmpkKUAw8/files/2/1/e/dataset_21ee7f6a-b141-4f58-9edf-40cf6498124b.dat
3 out header: out
4 Thread: 1
5 Located reads file [/tmp/tmpkKUAw8/files/e/9/9/dataset_e996d3cb-de7d-4e64-a9f8-75cd61e9f791.dat]
6 Running Bowtie2 on reads file [/tmp/tmpkKUAw8/files/e/9/9/dataset_e996d3cb-de7d-4e64-a9f8-75cd61e9f791.dat]...this may take a while...
7 Searching against 107 marker genes to find starting seed contigs for [/tmp/tmpkKUAw8/files/2/1/e/dataset_21ee7f6a-b141-4f58-9edf-40cf6498124b.dat]...
8 Try harder to dig out marker genes from contigs.
9 Done data collection. Running MaxBin...
10 Command: /home/berntm/miniconda3/envs/__maxbin2@2.2.7/opt/MaxBin-2.2.7/src/MaxBin -fasta out.contig.tmp -abund out.contig.tmp.reads.abund1 -seed out.seed -out out -min_contig_length 1000
11 Minimum contig length set to 1000.
12 Reading seed list...
13 Looking for seeds in sequences.
14 contig-201_2 [2.848706]
15 contig-201_100 [2.993483]
16 Get 2 seeds.
17
18 Start EM process.
19 Iteration 1
20 Iteration 2
21 Iteration 3
22 Iteration 4
23 Iteration 5
24 Iteration 6
25 Iteration 7
26 Iteration 8
27 Iteration 9
28 Iteration 10
29 Iteration 11
30 Iteration 12
31 Iteration 13
32 Iteration 14
33
34 EM finishes successfully.
35
36 Classifying sequences based on the EM result.
37 Minimum probability for binning: 0.50
38 Ignoring 0 bins without any sequences.
39 Number of unclassified sequences: 0 (0.00%)
40 Elapsed time: 0 days 00:00:01
41
42 Deleting intermediate files.
43
44
45 ========== Job finished ==========
46 Yielded 2 bins for contig (scaffold) file /tmp/tmpkKUAw8/files/2/1/e/dataset_21ee7f6a-b141-4f58-9edf-40cf6498124b.dat
47
48 Here are the output files for this run.
49 Please refer to the README file for further details.
50
51 Summary file: out.summary
52 Marker counts: out.marker
53 Marker genes for each bin: out.marker_of_each_gene.tar.gz
54 Bin files: out.001.fasta - out.002.fasta
55 Unbinned sequences: out.noclass
56 Marker plot: out.marker.pdf
57
58 Store abundance information of reads file [/tmp/tmpkKUAw8/files/e/9/9/dataset_e996d3cb-de7d-4e64-a9f8-75cd61e9f791.dat] in [out.abund1].
59
60
61 ========== Elapsed Time ==========
62 0 hours 0 minutes and 6 seconds.
63