Mercurial > repos > iuc > malt_run

annotate test-data/alignments_output1.sam @ 1:d9b0eda57c0b draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 6bde7c9985265b3086f1e1a6df814c20d02ee092"
author iuc
date Mon, 09 May 2022 15:07:25 +0000
parents 0f45b98a5a08
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0f45b98a5a08 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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1 @HD VN:1.5 SO:unsorted GO:query
0f45b98a5a08 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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2 @PG ID:1 PN:MALT CL:--mode BlastN --matchScore 2 --mismatchScore -3 --setLambda 0.625 --setK 0.41 --alignmentType Local --inFile input_fastq_gz.fastq.gz --index
0f45b98a5a08 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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3 @RG ID:1 PL:unknown SM:unknown
0f45b98a5a08 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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4 @CO BlastN-like alignments
0f45b98a5a08 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/malt commit 04aaa266f5b2e557f42c7feca4e081c7e9c1dae6"
iuc
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5 @CO Reporting AS: bitScore, ZR: rawScore, ZE: expected, ZI: percent identity, ZL: reference length