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comparison magicblast.xml @ 1:3db0c572fb04 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/blast commit 03f44b153a1a79a5e7304a2f73e9e9160923ee9b
author iuc
date Tue, 09 Aug 2022 12:58:00 +0000
parents 0aa444798f96
children c02930677dc7
comparison
equal deleted inserted replaced
0:0aa444798f96 1:3db0c572fb04
28 #end if 28 #end if
29 29
30 #if $db_opts.db_opts_selector == "histdb": 30 #if $db_opts.db_opts_selector == "histdb":
31 -db '${os.path.join($db_opts.histdb.extra_files_path, "blastdb")}' 31 -db '${os.path.join($db_opts.histdb.extra_files_path, "blastdb")}'
32 #elif $db_opts.db_opts_selector == "db": 32 #elif $db_opts.db_opts_selector == "db":
33 -db '${os.path.join($db_opts.database.fields.path, "blastdb")}' 33 -db '${db_opts.database.fields.path}'
34 #else: 34 #else:
35 #if $db_opts.subject.is_of_type('fasta.gz'): 35 #if $db_opts.subject.is_of_type('fasta.gz'):
36 -subject <(gunzip -c '${$db_opts.subject}') 36 -subject <(gunzip -c '${$db_opts.subject}')
37 #else: 37 #else:
38 -subject '${db_opts.subject}' 38 -subject '${db_opts.subject}'