Mercurial > repos > iuc > magicblast

comparison macros.xml @ 0:0aa444798f96 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/blast commit 15fc6c06f743bae276ff02dc405e7da61a07bd08"
author iuc
date Tue, 05 Apr 2022 12:10:32 +0000
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children 3db0c572fb04
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-1:000000000000 0:0aa444798f96
1 <macros>
2 <token name="@TOOL_VERSION@">1.6.0</token>
3 <token name="@VERSION_SUFFIX@">0</token>
4 <token name="@PROFILE@">20.09</token>
5 <xml name="requirements">
6 <requirements>
7 <requirement type="package" version="@TOOL_VERSION@">magicblast</requirement>
8 <requirement type="package" version="1.15">samtools</requirement>
9 </requirements>
10 </xml>
11 <xml name="output_sort_param">
12 <param name="output_sort" type="select" label="BAM sorting mode" help="The 'Not sorted' option can significantly extend the run time of the tool (it runs using a single thread)">
13 <option value="coordinate" selected="True">Sort by chromosomal coordinates</option>
14 <option value="name">Sort by read names</option>
15 <option value="unsorted">Not sorted (sorted as input)</option>
16 </param>
17 </xml>
18 <xml name="sanitize_query" token_validinitial="string.ascii_letters,string.digits,string.whitespace,string.punctuation">
19 <sanitizer>
20 <valid initial="@VALIDINITIAL@">
21 <remove value="&apos;"/>
22 </valid>
23 <mapping initial="none">
24 <add source="&apos;" target="&apos;&quot;&apos;&quot;&apos;"/>
25 </mapping>
26 </sanitizer>
27 </xml>
28 <xml name="citations">
29 <citations>
30 <citation type="doi">10.1186/s12859-019-2996-x</citation>
31 </citations>
32 </xml>
33 </macros>