Mercurial > repos > iuc > mageck_pathway

changeset 7:0588089272b3 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7"
author iuc
date Tue, 31 Aug 2021 09:18:40 +0000
parents 674dab05ec62
children
files mageck_macros.xml mageck_pathway.xml
diffstat 2 files changed, 6 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/mageck_macros.xml	Wed Apr 01 10:09:59 2020 +0000
+++ b/mageck_macros.xml	Tue Aug 31 09:18:40 2021 +0000
@@ -12,7 +12,11 @@
             <yield/>
         </requirements>
     </xml>
-
+    <xml name="bio_tools">
+        <xrefs>
+            <xref type="bio.tools">mageck</xref>
+        </xrefs>
+    </xml>
     <xml name="version">
         <version_command><![CDATA[
             echo $(mageck -v )", gplots version" $(R --vanilla --slave -e "library(gplots); cat(sessionInfo()\$otherPkgs\$gplots\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", xtable version" $(R --vanilla --slave -e "library(xtable); cat(sessionInfo()\$otherPkgs\$xtable\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
--- a/mageck_pathway.xml	Wed Apr 01 10:09:59 2020 +0000
+++ b/mageck_pathway.xml	Tue Aug 31 09:18:40 2021 +0000
@@ -1,6 +1,7 @@
 <?xml version="1.0"?>
 <tool id="mageck_pathway" name="MAGeCK pathway" version="@VERSION@" >
     <description>- given a ranked gene list, test whether one pathway is enriched</description>
+    <expand macro="bio_tools"/>
     <macros>
         <import>mageck_macros.xml</import>
     </macros>