Mercurial > repos > iuc > mageck_pathway

comparison mageck_pathway.xml @ 1:5ddd7e2ace85 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mageck commit 2eea865fe331694058922292e5681b96f4f0b4c7
author iuc
date Sat, 17 Feb 2018 10:39:00 -0500
parents 8fda298bf9c7
children 0588089272b3
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0:8fda298bf9c7 1:5ddd7e2ace85
44 label="Gene Summary file column" help="Column number or label in gene summary file for gene ranking; can be either an integer of column number, or a string of column label. This option is used to determine the column for positive selections and is disabled if --single-ranking is specified. Default: 8 (the 9th column)" /> 44 label="Gene Summary file column" help="Column number or label in gene summary file for gene ranking; can be either an integer of column number, or a string of column label. This option is used to determine the column for positive selections and is disabled if --single-ranking is specified. Default: 8 (the 9th column)" />
45 <param name="pathway_alpha" argument="--pathway-alpha" type="float" min="0" value="0.25" optional="true" 45 <param name="pathway_alpha" argument="--pathway-alpha" type="float" min="0" value="0.25" optional="true"
46 label="Alpha value for RRA pathway enrichment" help="The default alpha value for RRA pathway enrichment. Default: 0.25" /> 46 label="Alpha value for RRA pathway enrichment" help="The default alpha value for RRA pathway enrichment. Default: 0.25" />
47 <param argument="--permutation" type="integer" min="0" value="1000" optional="true" label="Permutation number for GSEA" help="Default: 1000" /> 47 <param argument="--permutation" type="integer" min="0" value="1000" optional="true" label="Permutation number for GSEA" help="Default: 1000" />
48 <param name="out_log" type="boolean" truevalue="True" falsevalue="" checked="false" 48 <param name="out_log" type="boolean" truevalue="True" falsevalue="" checked="false"
49 label="Output logfile" help="This file includes the logging information during the execution. Default: No" /> 49 label="Output Log file" help="This file includes the logging information during the execution. Default: No" />
50 </section> 50 </section>
51 51
52 </inputs> 52 </inputs>
53 53
54 <outputs> 54 <outputs>