Mercurial > repos > iuc > macs2

diff macs2_bdgbroadcall.xml @ 53:8f6b37d29df5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 586ecaebf9e6020fac2674fbda368e293d1c9bc2
author iuc
date Thu, 25 Jan 2018 02:11:22 -0500
parents 61d2f23acfb8
children 1ac88e46ee0f
line wrap: on
line diff
--- a/macs2_bdgbroadcall.xml	Wed Dec 27 10:17:42 2017 -0500
+++ b/macs2_bdgbroadcall.xml	Thu Jan 25 02:11:22 2018 -0500
@@ -8,8 +8,8 @@
     </expand>
     <expand macro="stdio" />
     <expand macro="version_command" />
-    <command>
-         <![CDATA[
+    <command><![CDATA[
+        @home_dir@
         macs2 bdgbroadcall
             --ifile '${ infile }'
             --cutoff-peak '${ cutoffpeak }'
@@ -20,8 +20,7 @@
             --ofile "macs2_bdgbroadcall.bdg"
         &&
         awk '!/^track name/' "macs2_bdgbroadcall.bdg" > '${ outfile }'
-        ]]>
-    </command>
+    ]]></command>
     <inputs>
         <param name="infile" type="data" format="bedgraph" label="bedGraph generated MACS" />
         <param name="cutoffpeak" type="float" label="Cutoff for peaks" value="2.0"