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comparison macs2_randsample.xml @ 63:25e46cf1ee36 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e8307adcc6ee9245fa2bb9ecb6de1cbe008dc2c3"
author iuc
date Sat, 02 Apr 2022 21:36:50 +0000
parents 1ac88e46ee0f
children
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62:1ac88e46ee0f 63:25e46cf1ee36
1 <tool id="macs2_randsample" name="MACS2 randsample" version="@VERSION_STRING@.1"> 1 <tool id="macs2_randsample" name="MACS2 randsample" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01">
2 <description>Randomly sample number or percentage of total reads</description> 2 <description>Randomly sample number or percentage of total reads</description>
3 <expand macro="bio_tools"/> 3 <expand macro="bio_tools"/>
4 <macros> 4 <macros>
5 <import>macs2_macros.xml</import> 5 <import>macs2_macros.xml</import>
6 </macros> 6 </macros>
8 <expand macro="stdio" /> 8 <expand macro="stdio" />
9 <expand macro="version_command" /> 9 <expand macro="version_command" />
10 <command><![CDATA[ 10 <command><![CDATA[
11 @home_dir@ 11 @home_dir@
12 macs2 randsample 12 macs2 randsample
13 -t '${ infile }' 13 -i '${ infile }'
14 -o '${ outfile }' 14 -o '${ outfile }'
15 --seed '${ seed }' 15 --seed '${ seed }'
16 16
17 --format '${ infile.extension.upper() }' 17 --format '${ infile.extension.upper() }'
18 18
48 <test> 48 <test>
49 <param name="infile" value="ChIP_200K.bed" ftype="bed" /> 49 <param name="infile" value="ChIP_200K.bed" ftype="bed" />
50 <param name="method_options_selector" value="percentage" /> 50 <param name="method_options_selector" value="percentage" />
51 <param name="percentage" value="80.0" /> 51 <param name="percentage" value="80.0" />
52 <param name="seed" value="1" /> 52 <param name="seed" value="1" />
53 <output name="outfile" file="bdgrandsample_output.bed"/> 53 <output name="outfile">
54 </test> 54 <assert_contents>
55 <has_text text="27179762" />
56 <has_text text="4441986" />
57 <has_size value="4787911" delta="500"/>
58 </assert_contents>
59 </output>
60 </test>
55 </tests> 61 </tests>
56 <help> 62 <help>
57 <![CDATA[ 63 <![CDATA[
58 **What it does** 64 **What it does**
59 65