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comparison macs2_randsample.xml @ 1:d202e3d663bb draft

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Uploaded
author iuc
date Thu, 16 Jan 2014 15:44:43 -0500
parents 9c157b556c33
children da0a1fcf7fe0
comparison
equal deleted inserted replaced
0:9c157b556c33 1:d202e3d663bb
1 <tool id="macs2_randsamoke" name="Randomly sample number or percentage" version="2.0.10.0"> 1 <tool id="macs2_randsamoke" name="Randomly sample number or percentage" version="2.0.10.0">
2 <description>of total reads</description> 2 <description>of total reads</description>
3 <requirements> 3 <expand macro="requirements" />
4 <requirement type="python-module">macs2</requirement> 4 <expand macro="version_command" />
5 <requirement type="python-module">numpy</requirement> 5 <macros>
6 <requirement type="package" version="2.0.10.2">macs2</requirement> 6 <import>macs2_macros.xml</import>
7 <requirement type="package" version="1.7.1">numpy</requirement> 7 </macros>
8 </requirements>
9 <command> 8 <command>
10 macs2 randsample 9 macs2 randsample
11 -t $infile 10 -t $infile
12 -o $outfile 11 -o $outfile
13 12
23 </command> 22 </command>
24 <inputs> 23 <inputs>
25 24
26 <!--may need to add a few more formats at later time--> 25 <!--may need to add a few more formats at later time-->
27 <param name="infile" type="data" format="sam,bam,bed" label="Sequencing alignment file" /> 26 <param name="infile" type="data" format="sam,bam,bed" label="Sequencing alignment file" />
28 <param name="tsize" type="float" label="Tag size" value="-1.0" help="This will overide the auto detected tag size. DEFAULT: Not set (-1.0) (--tsize)" /> 27 <expand macro="tag_size" />
29 28
30 <conditional name="method_options"> 29 <conditional name="method_options">
31 <param name="method_options_selector" type="select" label="Select action to be performed"> 30 <param name="method_options_selector" type="select" label="Select action to be performed">
32 <option value="percentage">Percentage</option> 31 <option value="percentage">Percentage</option>
33 <option value="number">Number</option> 32 <option value="number">Number</option>