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comparison macs2_randsample.xml @ 36:8c8ae1e19b10 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 344140b8df53b8b7024618bb04594607a045c03a
author iuc
date Mon, 04 May 2015 22:46:49 -0400
parents c82a1f154c60
children 1b3f899ef044
comparison
equal deleted inserted replaced
35:2f7d0d0b5bd0 36:8c8ae1e19b10
1 <tool id="macs2_randsample" name="MACS2 randsample" version="@VERSION_STRING@.0"> 1 <tool id="macs2_randsample" name="MACS2 randsample" version="@VERSION_STRING@.0">
2 <description>Randomly sample number or percentage of total reads</description> 2 <description>Randomly sample number or percentage of total reads</description>
3 <expand macro="requirements" />
4 <expand macro="version_command" />
5 <macros> 3 <macros>
6 <import>macs2_macros.xml</import> 4 <import>macs2_macros.xml</import>
7 </macros> 5 </macros>
6 <expand macro="requirements" />
7 <expand macro="stdio" />
8 <expand macro="version_command" />
8 <command> 9 <command>
9 macs2 randsample 10 macs2 randsample
10 -t "${ infile }" 11 -t "${ infile }"
11 -o "${ outfile }" 12 -o "${ outfile }"
12 13
17 --percentage "${ method_options.percentage }" 18 --percentage "${ method_options.percentage }"
18 #else: 19 #else:
19 --number "${ method_options.number }" 20 --number "${ method_options.number }"
20 #end if 21 #end if
21 </command> 22 </command>
22 <expand macro="stdio" />
23 <inputs> 23 <inputs>
24 <param name="infile" type="data" format="sam,bam,bed" label="Sequencing alignment file" /> 24 <param name="infile" type="data" format="sam,bam,bed" label="Sequencing alignment file" />
25 <expand macro="tag_size" /> 25 <expand macro="tag_size" />
26 26
27 <conditional name="method_options"> 27 <conditional name="method_options">