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comparison macs2_bdgdiff.xml @ 36:8c8ae1e19b10 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit 344140b8df53b8b7024618bb04594607a045c03a
author iuc
date Mon, 04 May 2015 22:46:49 -0400
parents c82a1f154c60
children e04fc51ee5e1
comparison
equal deleted inserted replaced
35:2f7d0d0b5bd0 36:8c8ae1e19b10
1 <tool id="macs2_bdgdiff" name="MACS2 bdgdiff" version="@VERSION_STRING@.0"> 1 <tool id="macs2_bdgdiff" name="MACS2 bdgdiff" version="@VERSION_STRING@.0">
2 <description>Differential peak detection based on paired four bedgraph files</description> 2 <description>Differential peak detection based on paired four bedgraph files</description>
3 <expand macro="requirements" />
4 <expand macro="version_command" />
5 <macros> 3 <macros>
6 <import>macs2_macros.xml</import> 4 <import>macs2_macros.xml</import>
7 </macros> 5 </macros>
6 <expand macro="requirements" />
7 <expand macro="stdio" />
8 <expand macro="version_command" />
8 <command> 9 <command>
9 macs2 bdgdiff 10 macs2 bdgdiff
10 --t1 "${ infile_pileup_cond1 }" 11 --t1 "${ infile_pileup_cond1 }"
11 --t2 "${ infile_pileup_cond2 }" 12 --t2 "${ infile_pileup_cond2 }"
12 --c1 "${ infile_control_cond1 }" 13 --c1 "${ infile_control_cond1 }"
17 --depth2 "${ depth2 }" 18 --depth2 "${ depth2 }"
18 --max-gap "${ maxgap }" 19 --max-gap "${ maxgap }"
19 --o-prefix MACS2 20 --o-prefix MACS2
20 21
21 </command> 22 </command>
22 <expand macro="stdio" />
23 <inputs> 23 <inputs>
24 <param name="infile_pileup_cond1" type="data" format="bedgraph" label="MACS pileup bedGraph for condition 1" /> 24 <param name="infile_pileup_cond1" type="data" format="bedgraph" label="MACS pileup bedGraph for condition 1" />
25 <param name="infile_pileup_cond2" type="data" format="bedgraph" label="MACS pileup bedGraph for condition 2" /> 25 <param name="infile_pileup_cond2" type="data" format="bedgraph" label="MACS pileup bedGraph for condition 2" />
26 26
27 <param name="infile_control_cond1" type="data" format="bedgraph" label="MACS control lambda bedGraph for condition 1" /> 27 <param name="infile_control_cond1" type="data" format="bedgraph" label="MACS control lambda bedGraph for condition 1" />